Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06684 ATGGCGTCGAACAAGATCGAACGCGGTCACCAGATGTACCGTGATGGACGCTACAGCGAGGCGTTAGGGTTCTACACGGAGGCAATCGCCATGGCCAAGACCAATCCCCAGAAGATCGCTTTGCATAGCAATCGAGCTGCTTGCTACCTCAAGCTTCACGATTTCAAGAAGGCAGCAGAAGAGTGTACCTCAGTGCTTGAGCTTGATCACAAACACAGTGGAGCATTGATGCTGCGGGCTCAAACACTGGTGACCCTGAAGGAGTATCATTCTGCACTTTTTGATGTCAATAGACTCTTGGAGTTGAATCCATCCTCAGAAGTCTATCAAAATCTTCATGCTCGCTTGAAGACACAATTGTCACTTGCTCCAATACCAGAGTCAGAAGAGGAGTTTGAAGAACAGGGAGATGAGAATGATGAGGTGATGCTAAATAGAGAGAACAAGAAGGATGAAATGGGAGAAAAATATGCAGCAACATCTAATATAAGGACAGATAAAAAGGATGAGCTTGGCAAAGATATTAGTAGTGGTGAATGTGTTCTCAAGGAAACAAACCCCAAGTTTTCGTCCAAACAAGGAAGAGACCAAAATTATGAGCCTAAAAAGTCCACAGCGGAGGTTATAGCTCCTAAACCACCAAACAGGGAATCAACCGAGCAACAATCCAAAGGATGGCAAACAATTCCAAAACCAAAAGGACATTCAGCTCTGGACTACGCTCGGTGGGACAGTGTTGAAGATGATTCTAGTGAAGATGATGACGATGATGAAGATGAAGAATCTTTGCCACAGTACCGATTTCGTGTGAGAACAGTCGGTGTACGTCCTGTAAAGTGA 840 0.4488 MASNKIERGHQMYRDGRYSEALGFYTEAIAMAKTNPQKIALHSNRAACYLKLHDFKKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLAPIPESEEEFEEQGDENDEVMLNRENKKDEMGEKYAATSNIRTDKKDELGKDISSGECVLKETNPKFSSKQGRDQNYEPKKSTAEVIAPKPPNRESTEQQSKGWQTIPKPKGHSALDYARWDSVEDDSSEDDDDDEDEESLPQYRFRVRTVGVRPVK. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06684 279 SMART tpr_5 73 106 IPR019734 GO:0005515
Seca4g06684 279 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca4g06684 279 SMART tpr_5 39 72 IPR019734 GO:0005515
Seca4g06684 279 MobiDBLite consensus disorder prediction 139 177 - -
Seca4g06684 279 MobiDBLite consensus disorder prediction 246 261 - -
Seca4g06684 279 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 279 - -
Seca4g06684 279 SUPERFAMILY TPR-like 6 119 IPR011990 GO:0005515
Seca4g06684 279 Pfam Anaphase-promoting complex, cyclosome, subunit 3 16 93 - -
Seca4g06684 279 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Seca4g06684 279 MobiDBLite consensus disorder prediction 126 266 - -
Seca4g06684 279 MobiDBLite consensus disorder prediction 215 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06684 Seca-Chr4 136777984 136781277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06684 2 120 Calmodulin-binding Proteins AT3G25230 34.351 1.74e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06684 - - gmx:100792046 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06684 4 136777984 136781277 Seca4g06684 4 136777984 136781277 ECH