Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06681 ATGAGCTCGGGATCACAGGATCAGGGTGTGAGTGTTGGCAACTCACTTGTTGCTGGTAATGGGACAACTCGATGGCTCTCCCCTTCAGGTGATTTTGCATTTGGGTTTTACCAACTTCCTAATGAGCTTTTCTTGTTGGCCATATGGTATGATAAGATACCTAATAAGACCATCATTTGGTATGCAAATGGAGACATCCCTACTCCTAAAGGATCAAGGTTGGAACTAAATGACTCTCGTGGGTTAGTGCTCAGTAACCCTCAAGGTTCAGAGCTATGGAGATCAGAATTCACATGGGGTATAGTTTACAGTGGTTTAATGAACAATACTGGAAATTTTCAGTTGCGAGACAAAAGTTTTGAGACATTATGGGACAGTTTCAATCATCCTACTGACACATTGGTTCCTACTCAAGTAATGGAGTTAAATGGCAAACTTTCTTCTCGACAAGGAGAGTTCAACTTCTCACGAGGAAGGTTCAAACTTCATCTCCAAAATGATGGTAATGTTGTGCTCAACCTTATAAATTTTCCTAGCAACTATAGTTATGAGCCTTACTATGGAACAAGCACTGCTGATGCTAATAATCAAACAAATGTTGGCCAACGTTTGATATTTGACCAATCAGGCTTCTTATACATACTAAAAAAAAGTGGGGAGAAGTTTTATATCACCAATCCAAATCAGAATGTCTCAACTGATGGCTTTTATTACAAAGCAACGATTAATTATGATGGAGTTTTCACCATAGCATATTACCCAAAAGATCCAAAAAATGGACAGAGTTGGGTTACTGTAAAGACTATACCCGAAAACATATGTTTGTATTCTACATTCACAGGTGGTGAAGGTATTTGTGGGTATAACAGCATTTGCACCCTTGGAGATAACCAAAGGCCAACGTGTACCTGTCCAAGTGGATATTCTTTAATTGATTCAAATAACATGTATGGTGGTTGCATACCAAATTCCCAAGTCATTTGTCAAGCAAATGGGCATCAAGGTTCACAAGATGATCTGTATACAATGATGGAATTGCCAAACACTGATTGGCCTAAATCTGATTACGAAATATTAAGTCCAAGTAGTCTACAAGAATGCAAAGAATCTTGTTTGCAGGATTGCTTATGTGTGTTGGCTTCTTTCAACCAAAGTTCCTGTTGGAAAAAGAAGCTCCCACTCTCTTATGGGAGGAAAGATCAAGGAGTAAAAGGAATTTCTGTCTTGAAATTGATGAAAAATGATGCTGCTCTCCCAAATGTGAAGAAAGATCATGATACTTTGATCATTGTGATATCAGTTCTTTTAGGTAGCTCTGTTTTCATCATTTTAATGTTGGTTGGTGCAATATGTTTTGGGTTCCCCTACAAATTCAAGAAGATCAAAAGTAGCAGATCAAAGAATAGTTTTGTTGACCAAAATTTGCAACATTTTACCTTCAAGGAAATTGTAGAAGCAACAAGCAATTTTAGAGAAGAATTGGGAAGGGGATCTTGCAGCATTGTCTACAAAGGAACAATTGAGATGATTAGTGTGGCTGTTAAAAAACTAGACAAGTTGATCCAAGACAGTGATAAGGAATTTCAAACTGAAATGAATGTGATAGGTCAAACTAATCACAGGAACCTCATTCGACTTCTTGGGTATTGCAATGAGGGACAACACCGGATTTTGGTATATGAGTTAATGAGAAATGGCACTTTAGCAAGCTTCCTTTTCACTCCTTTGAAACCAGATTGGAATCAACGGGTCCAAATTGCCTATGGGATTGCAAGAGGTCTTGTTTACTTGCATGAGGAATGTTGCACCCAGATCATTCATTGTGACATAAAGCCACAAAACATACTTCTAGATGATCATTATAATGCCAAGATTTCAGATTTTGGGTTAGCAAAGCTATTATTGATTAATCAGAGCCACACTGAAACTGGAATTAGAGGAACCAAAGGTTATGTTGCTCCTGATTGGTTTAGGAGTGCACCAATCACTGCTAAGGTTGATACTTATAGTTTTGGTGTATTATTGTTAGAGATAATTTGTTGTAGGAAAAATGTCGAAAAAGAATTTGTTGGTGAAGAAAAAGGGATTTTGACTGATTGGGCATATGATTGCTACAAGACTAAAAGACTGGACATTCTTCTAGAAAATGATTGTGAGGTTGTCAATGATATGAAGAGCTTGGAAAAGTTTGTCATGATTGTTATTTGGTGCATTCAAGAAGATCCCTTGCGTAGGCCAACAATGAAGGAGGTTTTGTTGATGCTAGAAGGAACTGTTGAAGTTGCGATTCCTCCAAGTCCCTATCTCTATGGTTCTGTTAGTGTAAATTGA 2331 0.3775 MSSGSQDQGVSVGNSLVAGNGTTRWLSPSGDFAFGFYQLPNELFLLAIWYDKIPNKTIIWYANGDIPTPKGSRLELNDSRGLVLSNPQGSELWRSEFTWGIVYSGLMNNTGNFQLRDKSFETLWDSFNHPTDTLVPTQVMELNGKLSSRQGEFNFSRGRFKLHLQNDGNVVLNLINFPSNYSYEPYYGTSTADANNQTNVGQRLIFDQSGFLYILKKSGEKFYITNPNQNVSTDGFYYKATINYDGVFTIAYYPKDPKNGQSWVTVKTIPENICLYSTFTGGEGICGYNSICTLGDNQRPTCTCPSGYSLIDSNNMYGGCIPNSQVICQANGHQGSQDDLYTMMELPNTDWPKSDYEILSPSSLQECKESCLQDCLCVLASFNQSSCWKKKLPLSYGRKDQGVKGISVLKLMKNDAALPNVKKDHDTLIIVISVLLGSSVFIILMLVGAICFGFPYKFKKIKSSRSKNSFVDQNLQHFTFKEIVEATSNFREELGRGSCSIVYKGTIEMISVAVKKLDKLIQDSDKEFQTEMNVIGQTNHRNLIRLLGYCNEGQHRILVYELMRNGTLASFLFTPLKPDWNQRVQIAYGIARGLVYLHEECCTQIIHCDIKPQNILLDDHYNAKISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVGEEKGILTDWAYDCYKTKRLDILLENDCEVVNDMKSLEKFVMIVIWCIQEDPLRRPTMKEVLLMLEGTVEVAIPPSPYLYGSVSVN. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06681 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 5 128 - -
Seca4g06681 776 CDD PAN_AP_plant 332 411 - -
Seca4g06681 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 763 - -
Seca4g06681 776 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 18 767 - -
Seca4g06681 776 PIRSF SRK 1 775 IPR024171 GO:0004674
Seca4g06681 776 SMART serkin_6 488 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06681 776 SMART blect_4 7 130 IPR001480 -
Seca4g06681 776 Pfam Protein kinase domain 491 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06681 776 Gene3D - 130 257 IPR036426 -
Seca4g06681 776 Pfam D-mannose binding lectin 57 145 IPR001480 -
Seca4g06681 776 FunFam Serine/threonine-protein kinase 131 277 - -
Seca4g06681 776 Gene3D Transferase(Phosphotransferase) domain 1 563 762 - -
Seca4g06681 776 Gene3D - 6 129 IPR036426 -
Seca4g06681 776 CDD B_lectin 10 130 IPR001480 -
Seca4g06681 776 FunFam S-receptor-like serine/threonine-protein kinase 457 562 - -
Seca4g06681 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 44 173 IPR036426 -
Seca4g06681 776 ProSiteProfiles Bulb-type lectin domain profile. 1 128 IPR001480 -
Seca4g06681 776 Gene3D Phosphorylase Kinase; domain 1 454 562 - -
Seca4g06681 776 ProSiteProfiles Protein kinase domain profile. 488 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06681 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Seca4g06681 776 SUPERFAMILY Protein kinase-like (PK-like) 468 756 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06681 Seca-Chr4 136452875 136455291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06681 474 757 Receptor kinase-like Gene Family AT1G60800 43.151 3.31e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g06681 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06681 - - mtr:25487002 1305.43