Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06680 ATGCCAACCAACCAAAAAAACCAAACACAACACACAACACAAGCTCCCTCCTTTCCCCTTAAAAATTTCCATATGCCCCTCTCTCCTTCTTCCATGGCTTCTTCCATCCCTCACTTGTATTCAAACTACTCATTCACTTATTCTGATCTTGCAGATCAGTTCCCCATCCCTTCTAATACCTCTTTCATGGACCATAATAATAACAATACCATGTGGGGTTGTCATCAAGATAGCTTATTTCCTGTGGTTGATAATAATGGGGCACTTGATCATATTGTGTCACTGGATTGTGATACCTTGTCTTCTGCTTGGATGCCAACCTTCTCTGAGCAACTAGCTGCTGGAGGCATTAATAACAACAATTCAGATAACAACTTGGCCATTTCAGATTGTAAAATGGGCTTCTATGGTGGCATTGCTGCTGCAGGGTTTCAGAATTTCAACAGCAGATTCCAGCCTCATATTGGTGACTTTGGAGATGAATGTTGTGGTTTTCTGGAGGATATTAAGCCACCTAATAATTCTTATCCTAATACAGCTGCCACCAGAGAAAACTGGGGAATTCAAGGTAACCAAATAGCAGCAGTTGAAGAGCCGAACATAAAGGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTATGCATGTCGGAAAACGTTAGCTGATCGGCGAGTGAGAGTTAGGGGAAGGTTTGCAAGGAACAATGAGCTATGTGATCAGGAAGACAATATGGCCACAAAAAAGCATCACAAATTAGATCATCATGACTTTTATGGCGCTGATTCATTTCAGTTCCAGTTAAAGAATGAGGAGGAGGACTGGTTGCAAGAGGCCATGGCAAGTTTGGTCTATTTATCTCATTCTTCACCGGAAGATATGTGA 939 0.4079 MPTNQKNQTQHTTQAPSFPLKNFHMPLSPSSMASSIPHLYSNYSFTYSDLADQFPIPSNTSFMDHNNNNTMWGCHQDSLFPVVDNNGALDHIVSLDCDTLSSAWMPTFSEQLAAGGINNNNSDNNLAISDCKMGFYGGIAAAGFQNFNSRFQPHIGDFGDECCGFLEDIKPPNNSYPNTAATRENWGIQGNQIAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDQEDNMATKKHHKLDHHDFYGADSFQFQLKNEEEDWLQEAMASLVYLSHSSPEDM. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06680 312 ProSiteProfiles CCT domain profile. 211 253 IPR010402 GO:0005515
Seca4g06680 312 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g06680 312 Pfam CCT motif 211 253 IPR010402 GO:0005515
Seca4g06680 312 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g06680 312 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 106 266 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06680 Seca-Chr4 136186728 136188732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06680 207 264 C2C2-CO-like Transcription Factor Family AT5G15850 46.552 1.05e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g06680 CCT 1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06680 - - gmx:102660475 390.193