Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06677 ATGGGGGAAGAAAATGAAGAGATTAAATCATTTAAGGATTTGGGCTTATCTGAACAATTGGTGGAAGCTTGTGAAAAACTGGGTTGGAAAAATCCGTTAAAGATACAGGCAGAGGCGATTCCTCTTGCGTTGGAAGGAAAAGATGTGATTGGACTTGCCCAAACAGGTTCCGGTAAGACTGGTGCTTTTGCTCTTCCCATATTGCATTCCCTTTTAGAAGCACCACGCCCAAAAGATTTCTTTGCTTGTGTATTGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTTGGTTCGGAAATTGGTGTAAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACACCTGGACGAGTTTTAGATCACCTAAAACATACCAAAGGATTTTCTCTTAGTAGATTAAAATACTTTGTCTTAGATGAGGCAGACAGGCTGCTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGTGATTCCTCGTGAACGGAGAACATTTCTATTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTTCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCAAAATATTCCACTGTTGACACACTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACAAAAGGATTGCTACCTTGTATACATTCTTACTGAAATGGCTGGAAGTACATCAATGGTATTCACTCGGACATGTGATGCAACTCGGCTTCTGGCCTTGATGCTTAGGAATCTTGGCCTTAAAGCCATCCCAATTAATGGTCATATGAGCCAGCCAAAGAGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGAGTGCAATATTCTCCTTTGTACTGACGTAGCTAGTAGAGGACTGGATATTCCAACGGTTGATGTGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAGAAGCTGCCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGGAGGAGCGTGTTAGCGAGGCCAAAAGATTAGCAGTAATGAAAATGAAGGAAACCGGAGGGAAGAAGAAACGGAGGGGCGAAGGAGATGACGGTGAGGAAGATATTGACAAGTACTTAGGTCTTAAGGATGGAAAATCATCCAAGAAGTTTAGAAGAAGATGA 1320 0.4235 MGEENEEIKSFKDLGLSEQLVEACEKLGWKNPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHSLLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKHTKGFSLSRLKYFVLDEADRLLNEDFEESLNEILQVIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKQKDCYLVYILTEMAGSTSMVFTRTCDATRLLALMLRNLGLKAIPINGHMSQPKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAVMKMKETGGKKKRRGEGDDGEEDIDKYLGLKDGKSSKKFRRR. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06677 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Seca4g06677 439 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Seca4g06677 439 SMART ultradead3 28 228 IPR014001 -
Seca4g06677 439 Gene3D - 219 391 IPR027417 -
Seca4g06677 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Seca4g06677 439 MobiDBLite consensus disorder prediction 401 423 - -
Seca4g06677 439 CDD SF2_C_DEAD 225 354 - -
Seca4g06677 439 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Seca4g06677 439 SMART helicmild6 264 345 IPR001650 -
Seca4g06677 439 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Seca4g06677 439 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Seca4g06677 439 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 395 - -
Seca4g06677 439 Pfam Helicase conserved C-terminal domain 239 345 IPR001650 -
Seca4g06677 439 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Seca4g06677 439 Gene3D - 2 218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06677 Seca-Chr4 136075497 136092846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06677 6 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.383 8.04e-64 209