Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06676 ATGAAGGAGGGTGGTAGAAAACAAGGTGCAATGGCACCATGTGCAGCATGCAAGCTTCTTAGAAGGAGATGTGCACAGGATTGTGTGTTTGCACCTTATTTCCCTGCAGATGAACCTCACAAGTTTGGCAGTGTTCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTGCAGCAGGAGTTACCAGAACACCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGAGTGAGGGACCCTGTTTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTGCTTCAAACTCAATTGGCATTGGCACAAGCAGAGGTTGTGCACATGAGAATGAGCCAATTCTCATCCTCCTCAGATCCTCAACCATCATCAATGCCTCCTCCTATGGCCTCTGAGAACTTATACCAATCAAATAGACTCCTTTCTTCTCAGACCAAGTCCCTTTTTGGCACAGACACTGACACCAACATGGGGCAATCCTTGTGGTCATACTAG 519 0.4586 MKEGGRKQGAMAPCAACKLLRRRCAQDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMSQFSSSSDPQPSSMPPPMASENLYQSNRLLSSQTKSLFGTDTDTNMGQSLWSY. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06676 172 Coils Coil 93 113 - -
Seca4g06676 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 139 - -
Seca4g06676 172 MobiDBLite consensus disorder prediction 120 140 - -
Seca4g06676 172 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Seca4g06676 172 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06676 Seca-Chr4 136067107 136071241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06676 1 171 AS2 family AT1G31320 66.092 1.03e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g06676 LOB 4.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06676 - - gmx:100803188 246.899