Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06668 ATGGGTGTTAACGAAGATTTCAACAAGGATGGAGAGTATGTGGAAGATGAAGTTCCACTTCCAGGATTTCGGTTCCATCCAACAGATGAAGAACTTGTTAGTTTCTACCTTAGAAGGAAGCTTGAAAAGAAACCCATCAGTATTGAGCTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCGAGTGTAACTGGAGGAGAGAAAGAAGGGTACTTCTTTTGCAAAAGAGGAAGAAAGTATAGGAACAGCATAAGGCCAAACAGAGTCACAGGGTCAGGGTTCTGGAAAGCAACAGGGATAGACAAGCCAGTGTATTCACATGGAGGAGAAGGCAATGACTGTGTTGGACTCAAGAAAACACTTGTTTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTTCCAATACTGAAACCAAAACAAACCTTCCCAACAACAAGAATTATCTAGATACTGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTGCCACAAAGAAAGAACGTGCCAGATTTGAGACAATTAGGTGGTAAGCGTCATCATCATGAAAAGAGCAGTAACAGTAGTAATAATCAAGAAACATATATCAATTTTGGTTGTTATGAGAATGAGCAGAAACCTGCTGTCACATCAAGCAGTGAACATCAAAGGAATAATCATCATCAGCAGTTTCATGTAGGTGAGTTTAGTTCTCAGGGGTCACAACAACCTCAACTAAATGTGCCATCTTCAAACATTTGGATTAATAATCCGGTTGCCAATGACTTCTTCACATTTGATAACTGGGATGAGCTTGGATCAGTTGTCAACTTTGCTGCTTAA 888 0.3998 MGVNEDFNKDGEYVEDEVPLPGFRFHPTDEELVSFYLRRKLEKKPISIELIKQIDIYKYDPWDLPKASVTGGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTETKTNLPNNKNYLDTAHEAEIWTLCRIFKRNVPQRKNVPDLRQLGGKRHHHEKSSNSSNNQETYINFGCYENEQKPAVTSSSEHQRNNHHQQFHVGEFSSQGSQQPQLNVPSSNIWINNPVANDFFTFDNWDELGSVVNFAA. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06668 295 Gene3D NAC domain 28 186 IPR036093 GO:0003677|GO:0006355
Seca4g06668 295 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Seca4g06668 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 253 - -
Seca4g06668 295 MobiDBLite consensus disorder prediction 191 215 - -
Seca4g06668 295 SUPERFAMILY NAC domain 17 183 IPR036093 GO:0003677|GO:0006355
Seca4g06668 295 MobiDBLite consensus disorder prediction 191 209 - -
Seca4g06668 295 FunFam NAC domain-containing protein 35 28 186 - -
Seca4g06668 295 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06668 Seca-Chr4 135759345 135761526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06668 6 198 NAC Transcription Factor Family AT1G26870 60.825 8.83e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g06668 NAM 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06668 - - gmx:100790471 455.677