Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06664 ATGGCTTCCATTAGTGGCTACAAAGCAAGTGACCTGTTCCAAGCTCAAGCTCACTTGTACAGAGTCATGTATAGCTTCTTGAATCCCATGTGCATTAAGTGGGCCATTGACCTTGGCATACCAGATATAATCCACAACCATGGCCAAGCCATTACTCTTTCTGAGCTGGTTTCAACTCTTCAGGTTCCACAAGCAAAAGCTACTTGCATCCAGCGCCTCATGCGATTATTGGTACACAATGACATCTTTGCAATCCTCAAAATAGATGACAACATAGAAGGGAAAGAAGCATATGCTCTTACTCCAACATCACAACTCCTTGTCAAAGGCAATGATCATTGCTTATCTTCAATGGTTCAGTTTTTAAATGACCCAACTCTGGTTGGTTTATACCATCAATTGGGGAAGTGGACTTTTGGGGAGGAGCTCACAATTGTTGAGACTGCATTAGGCCTAGGAAGTTATTGGGATTTTATTAATCAAAATCCCACTCACTTGAAGATTTTCAATGAGGCTATGGAAAGTGATTCTCACTTGATAAGGTTGGCACTGAGAGATTGTAAATCAGTTTTTGAGGGACTGGATTCCTTGGTTGATGTTGGTGGGGGAACTGGAAATACAGGTAAGATTATTTGTGAGGCATTTCCTAAATTAAAATACATAGTCTTGGACCTTCCACAGGTTGTTGCAGGCTTAACAGGAAGCAACAATTTGAGTTTTGTTGGTGGGAACATGTTTAAGTCTATCCCTCATGCTGATGCAGTTTTACTTAAGTTGATGTTACACAATTGGAGCGACAATGATTGTATAAAGATACTAAAAAATTGCAAAGAAGCTATTTCAGGAAAAGGCAAAGGAGGAAAACTGATCATCATAGATATAGTGATAAATGAAAAGCAAGATGAGCATGAAATGACAGAACTAAAGCTTTTGCTTGATGTAGTTATGATGACCAGTGTCAATGGAAAAGAGAGAGATGAAAAAGATTGGAAGCGACTTTTCATGAAAGCGGGCCTTGAGCACTATAAAATATTTTGCACATTTGGGACATGGTCTCTTATTGAGCTTTATCCTTAA 1077 0.3918 MASISGYKASDLFQAQAHLYRVMYSFLNPMCIKWAIDLGIPDIIHNHGQAITLSELVSTLQVPQAKATCIQRLMRLLVHNDIFAILKIDDNIEGKEAYALTPTSQLLVKGNDHCLSSMVQFLNDPTLVGLYHQLGKWTFGEELTIVETALGLGSYWDFINQNPTHLKIFNEAMESDSHLIRLALRDCKSVFEGLDSLVDVGGGTGNTGKIICEAFPKLKYIVLDLPQVVAGLTGSNNLSFVGGNMFKSIPHADAVLLKLMLHNWSDNDCIKILKNCKEAISGKGKGGKLIIIDIVINEKQDEHEMTELKLLLDVVMMTSVNGKERDEKDWKRLFMKAGLEHYKIFCTFGTWSLIELYP. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06664 358 PANTHER O-METHYLTRANSFERASE 13 342 IPR016461 GO:0008168
Seca4g06664 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca4g06664 358 Pfam O-methyltransferase domain 144 339 IPR001077 GO:0008171
Seca4g06664 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Seca4g06664 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 356 IPR029063 -
Seca4g06664 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Seca4g06664 358 Gene3D - 2 107 IPR036388 -
Seca4g06664 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Seca4g06664 358 FunFam Coniferyl alcohol 9-O-methyltransferase 2 107 - -
Seca4g06664 358 Gene3D Vaccinia Virus protein VP39 108 358 IPR029063 -
Seca4g06664 358 FunFam O-methyltransferase ZRP4 109 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06664 Seca-Chr4 135674384 135675640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06664 29 356 Monolignol Biosynthesis Gene Families AT5G54160 31.024 3.22e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06664 K22588 K13262 gmx:100813225 427.172