Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06653 ATGTTTTCACAGCCAGCTCTTATTTGTAAGAAACAAGGACTTGTCAAGATGGTGAAGTTCACAGTTGATGAGCTTCGGCGGATTATGGACCTCAAACACAATATTAGAAACATGTCTGTTATTGCTCATATTGATCATGGAAAATCAACTCTTACTGATTCTCTTGTGGCTGCTGCTGGCATTATAGCAGAAGAGGTTGCAGGAGATGTTAGGATGACAGATACCCGTCAGGATGAAGCTGAGCGTGGTATCACTATCAAGTCTACTGGTATCTCTCTTTACTATGAGATGTCTGATAATGATTTGAAGAATTTCAAGGGAGAACGTGAAGGGAATGAGTACCTTATAAACCTCATTGACTCCCCAGGGCATGTGGATTTCTCATCTGAGGTCACAGCTGCCCTTAGGATCACTGATGGTGCACTTGTGGTAGTGGATTGTGTTGAGGGTGTGTGTGTCCAAACAGAAACTGTGCTGAGACAAGCCCTTGGAGAAAGGATTAGGCCTGTTTTAACTGTTAACAAGATGGATAGGTGCTTCCTTGAGCTCCATCTTGATGCTGAAGATGCATACCTTACATTTCAGAGGGTTATTGAGAGTGCAAATGTCATCATGGCAACCTATGAAGATGCTCTACTTGGTGATGTTCAGGTATACCCTGAAAAGGGAACGGTTGCTTTTTCTGCTGGTTTGCATGGGTGGGCTTTTACCTTGACCAACTTTGCCAAGATGTATGCTTCCAAGTTTGGAGTTGATGAGGGAAAGATGATGAGTAGGCTTTGGGGTGAGAATTTCTTTGACCCTGCTACAAAAAAGTGGACCAACAAAGACACTGGGAGTTCTACTTGCAAGCGTGGCTTTGTTCAGTTCTGCTATGAACCAATTAAGCAGATAATTGAACTTTGCATGAATAACCAGAAGGATAAGTTGTGGCCAATGTTGCAAAAGCTTGGGGTGAACTTGAAGTCAGAGGAGAAGGAATTGACAGGAAAGGCTTTGATGAAGCGTGTTATGCAAAGCTGGCTCCCAGCAAGTAGTGCTCTTCTGGAGATGATGATATTTCATCTTCCCTCTCCTGCCAAGGCTCAAAAATATCGCGTTGAGAATTTGTATGAGGGTCCCCTTGATGATCCTTATGCTTCTGCTATCAGAAATTGTGATCCTGAAGGACCTCTAATGCTTTATGTCTCAAAGATGATTCCTGCATCTGATAAGGGTAGGTTTTATGCTTTTGGTCGTGTCTTCTCTGGCAAGGTTTCAACTGGTATGAAGGTCAGAATTATGGGACCAAATTATGTCCCAGGGGAGAAGAAAGATCTGTATGTGAAGAGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAAACTGTGGAGGATGTCCCTTGTGGAAATACAGTTGCCATGGTGGGTTTGGATCATTTTATTACCAAGAATGCAACTTTAACAAGTGAGAAAGAAGTTGATGCACATCCCATTCAAGCTATGAAGTTTTCTGTATCACCTGTGGTAAGTGTAGCTGTCACATGCAAGGTTGCATCAGATCTTCCTAAGCTTGTTGAAGGCCTTAAACGTTTAGCAAAGTCAGACCCTATGGTGGTGTGTACAATTTCAGAGACTGGAGAACATATCATAGCTGCTGCTGGTGAGCTGCATCTTGAAATCTGCTTGAAGGACTTGCAGGATGATTTTATGAATGGAGCTGAGATTTCAAAATCTGATCCTATTGTCTCCTTCCGTGAGACTGTGTTTGAGAAGTCTAGCCATACTGTGATGAGCAAGTCACCTAACAAACACAACCGCCTGTACATGGAAGCAAGGCCAATGGAGGATGGACTTGCAGAGGCCATTGATGATGGGAAGATTGGACCAAGGGATGACCCCAAAAATCGTTCTAAAATATTGTCTGAAGAGTTTGGTTGGGACAAGGATCTTGCAAAGAAAATATGGTGTTTTGGTCCTGAGACCACTGGACCCAACATGGTGGTAGATACATGCAAGGGTGTTCAGTATCTGAATGAAATCAAGGACTCAGTTGTTGCTGGCTTTCAGATAGCATCAAAAGAAGGTCCAATGGCTGATGAGAACATGAGAGGGGTCTGCTTTGAGATTTGTGATGTTGTTCTTCATGCTGATGCCATTCACAGAGGAGGGGGCCAAATCATTCCAACTGCTAGAAGGGTCTTCTATGCTGCCATGATGACAGCAAAGCCAAGACTTCTGGAGCCTGTGTATCTGGTGGAAATACAGGCACCTGAACAGGCTCTTGGTGGTATATACAGTGTTCTTAACCAGAAAAGAGGGCATGTGTTTGAGGAAATCCAGAGGCCTGGCACCCCACTTTACAATGTTAAGGCATACTTGCCTGTTGTTGAGTCATTTAAATTCAATGAATCACTGAGGGCTCAAACTGGCGGACAGGCTTTCCCACAGTTGGTATTTGATCACTGGGATGTGGTGCCATCTGATCCACTGGAACCTGGGACTCCTGCTGCTACACATGTTGCTGAGATAAGAAAGAAGAAAGGCTTGAAGGAACAAATGACGTCTCTCTCTGAGTTCGAGGACAAGCTTTGA 2580 0.4376 MFSQPALICKKQGLVKMVKFTVDELRRIMDLKHNIRNMSVIAHIDHGKSTLTDSLVAAAGIIAEEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDNDLKNFKGEREGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELHLDAEDAYLTFQRVIESANVIMATYEDALLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEGKMMSRLWGENFFDPATKKWTNKDTGSSTCKRGFVQFCYEPIKQIIELCMNNQKDKLWPMLQKLGVNLKSEEKELTGKALMKRVMQSWLPASSALLEMMIFHLPSPAKAQKYRVENLYEGPLDDPYASAIRNCDPEGPLMLYVSKMIPASDKGRFYAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDHFITKNATLTSEKEVDAHPIQAMKFSVSPVVSVAVTCKVASDLPKLVEGLKRLAKSDPMVVCTISETGEHIIAAAGELHLEICLKDLQDDFMNGAEISKSDPIVSFRETVFEKSSHTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGKIGPRDDPKNRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDTCKGVQYLNEIKDSVVAGFQIASKEGPMADENMRGVCFEICDVVLHADAIHRGGGQIIPTARRVFYAAMMTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEIQRPGTPLYNVKAYLPVVESFKFNESLRAQTGGQAFPQLVFDHWDVVPSDPLEPGTPAATHVAEIRKKKGLKEQMTSLSEFEDKL. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06653 859 SUPERFAMILY EF-G C-terminal domain-like 500 576 IPR035647 -
Seca4g06653 859 FunFam Elongation factor 2 238 342 - -
Seca4g06653 859 CDD EF2_snRNP_III 511 575 - -
Seca4g06653 859 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 74 89 IPR031157 -
Seca4g06653 859 Gene3D Yeast translation eEF2 (G' domain) 243 342 - -
Seca4g06653 859 FunFam Translation elongation factor 2 502 579 - -
Seca4g06653 859 SMART EFG_IV_2 621 738 IPR005517 GO:0005525
Seca4g06653 859 Gene3D - 739 859 - -
Seca4g06653 859 CDD EF2_II 391 486 - -
Seca4g06653 859 SUPERFAMILY Ribosomal protein S5 domain 2-like 578 742 IPR020568 -
Seca4g06653 859 Pfam Elongation factor G C-terminus 740 826 IPR000640 -
Seca4g06653 859 Gene3D - 29 242 IPR027417 -
Seca4g06653 859 NCBIfam small GTP-binding protein domain 36 195 IPR005225 GO:0005525
Seca4g06653 859 Pfam Elongation factor G, domain IV 626 738 IPR005517 GO:0005525
Seca4g06653 859 Pfam Elongation factor Tu GTP binding domain 33 358 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 Pfam Elongation Factor G, domain III 503 566 IPR041095 -
Seca4g06653 859 CDD eEF2_snRNP_like_C 743 822 - -
Seca4g06653 859 SMART EFG_C_a 740 829 IPR000640 -
Seca4g06653 859 Pfam Elongation factor Tu domain 2 409 483 IPR004161 GO:0005525
Seca4g06653 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 357 IPR027417 -
Seca4g06653 859 FunFam Translation elongation factor 2 359 500 - -
Seca4g06653 859 CDD EF2 36 246 - -
Seca4g06653 859 Gene3D - 585 738 IPR014721 -
Seca4g06653 859 Gene3D Translation factors 359 500 - -
Seca4g06653 859 CDD aeEF2_snRNP_like_IV 575 747 - -
Seca4g06653 859 FunFam Translation elongation factor 2 739 859 - -
Seca4g06653 859 Gene3D Elongation Factor G (Translational Gtpase), domain 3 502 579 - -
Seca4g06653 859 SUPERFAMILY Translation proteins 358 492 IPR009000 -
Seca4g06653 859 FunFam Translation elongation factor 2 19 253 - -
Seca4g06653 859 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 PRINTS GTP-binding elongation factor signature 37 50 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 PRINTS GTP-binding elongation factor signature 169 178 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 PRINTS GTP-binding elongation factor signature 81 89 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 23 858 - -
Seca4g06653 859 FunFam Translation elongation factor 2 585 738 - -
Seca4g06653 859 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 33 360 IPR000795 GO:0003924|GO:0005525
Seca4g06653 859 SUPERFAMILY EF-G C-terminal domain-like 743 853 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06653 Seca-Chr4 135453422 135456701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06653 17 859 Eukaryotic Initiation Factors Gene Family AT1G56070 86.951 0.0 1556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06653 K03234 - tcc:18594569 1535.78