Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06630 ATGCGTCTTGGGACCCCTTCCTCCCTCTCCCGTATTCTATTCCCCACGTTAAGGACGGAATGTACTGTTTCTGCTGCGGGTTCTATTCCCCACCCAAGTAGCACACGATTTATTGCTTATGAAGAACTTAAAGAAGCAGCAAACAATTTTGAACCAGCGAGTGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGATGGTACTTCTATAGCAATTAAGAGGCTTACAAGTGGAGGGCAACAAGGTGACAAAGAGTTTCTGGTTGAGGTTGAAATGCTTAGCCGATTGCATCACCGTAACCTTGTAAAACTGGTGGGATACTATAGTAGTCATGACTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAAGCTTGGCTTCATGGAATAAATTGTCCTTTGGATTGGGACACCAGAATAAAAATTGCTCTTGATGCTGCAAGAGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACACAGAGATTTCAAGGCATCCAACATATTGCTTGAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCCATGACTGGGCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCTTTTGCAAGAACTACTTACTGGAAGGAAATATGTCACAGCCAAGTGCACAAGAGAACCTTGTTACTTGGGTTAGTTCTGTAGCTAGGCCAATCCTGAGAGACAAGGACCGGCTGGAAGAGATTGTTGATCCCAAACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTTCGTGTGTGCACTATTGCTGCAGCTTGTGTTGCTCCTGAAGCAAGCCAACGACCCACAATGGGTGAAGTGGTACAATCACTTAAAATGGTGCAGCGCATCACAGAATATCAAGATTCTATGTTAGCCTCATCCAATACATGGCTAAACATGAGACAGTCCTCTAGCACTTTTGAGTTTGACGGAACATCTTCAATGTTCTCCTCATGTCCTTACTCTAGTCTAAGTGATGCCTTTGACAATGAGAACATTTATAGGACGGTGGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 1185 0.4295 MRLGTPSSLSRILFPTLRTECTVSAAGSIPHPSSTRFIAYEELKEAANNFEPASVLGEGGFGRVFKGVLNDGTSIAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSSHDSSQNLLCYELVPNGSLEAWLHGINCPLDWDTRIKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVFCKNYLLEGNMSQPSAQENLVTWVSSVARPILRDKDRLEEIVDPKLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEYQDSMLASSNTWLNMRQSSSTFEFDGTSSMFSSCPYSSLSDAFDNENIYRTVVFSEDLHEGR. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06630 394 CDD STKc_IRAK 56 325 - -
Seca4g06630 394 PANTHER OS01G0750732 PROTEIN 31 340 - -
Seca4g06630 394 FunFam Receptor-like serine/threonine-protein kinase ALE2 128 343 - -
Seca4g06630 394 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Seca4g06630 394 ProSiteProfiles Protein kinase domain profile. 50 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06630 394 Gene3D Phosphorylase Kinase; domain 1 32 127 - -
Seca4g06630 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca4g06630 394 Pfam Protein tyrosine and serine/threonine kinase 54 324 IPR001245 GO:0004672|GO:0006468
Seca4g06630 394 FunFam Receptor-like serine/threonine-protein kinase ALE2 30 127 - -
Seca4g06630 394 SUPERFAMILY Protein kinase-like (PK-like) 29 326 IPR011009 -
Seca4g06630 394 Gene3D Transferase(Phosphotransferase) domain 1 128 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06630 Seca-Chr4 135190907 135192443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06630 24 394 Receptor kinase-like Gene Family AT4G02010 79.420 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca4g06630 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06630 - - adu:107492376 652.129