Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06629 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCACCGTCGGGTTCCATTTCGGGCTCCTCTCGCTCCTCTTCCCCCTCAGATTCCCGCTCCTCCTCTCGCTCACGCTCTCGTTCTCGCTCCCGTTCTCGCTCCCGTTCTCCCTCTCGTTCCAGATCTTTCTCCTCCTCCTCCTCCCCCTCCCGCAGTTCCCGCAGCCGGAGCCGGAGCCCTCCCCCTCAGAGACGGAGAAGTCCTGCTGAAGCAGCTAGGCGAGGTCGATCTCCTCCTCCTCCTCAGTCTAAGAGAACTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTGCATGTAGAAAAACTCAGCAGGAATGTTAATGAGGGCCATTTGAAAGAAATTTTCAGTAATTTTGGCGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAGATAGATGGCAATGTCATTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGCTCCAAAGAGAGAGGCCCCTAGGACTGATAATGCTGGTGCAGATGTTGAAAAAGATGGGCCGAAGCGTCAAAGAGAATCTTCTCCTCGGAGAAAACCTCCCTCACCACGAAGGAGATCTCCTATGCCTCGAAGGGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTGCGTCGTCGTTTAGACTCTCCTCCTTATCGCCGTGGAGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGGAAGAGGTCGCTCTCCATCTCCACCTAGGCGCCTTAGATCCCCCGCAAGGGTCTCACCTAGAAGATTGCGTGGAAGCCCAGGTCGTAGACGTTCTCCTCCTCCTCCACCGAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATCAGTCGTAGGCGCAGTCGCTCTCCAGTACGTAGGTCTGCACGCTCACGCTCAAGATCATTCTCACCTCGCAGAGGTCGACCACCTGTGAGACGGGGGAGGTCATCATCTTACTCTGATTCACCAAGTCCACGCAAGGTATCCCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGCAGCAGCAGTAGTTCACCACCCCCAGCTCGCAAACCATAG 1269 0.5422 MAKPGRGRRSPPSGSISGSSRSSSPSDSRSSSRSRSRSRSRSRSRSPSRSRSFSSSSSPSRSSRSRSRSPPPQRRRSPAEAARRGRSPPPPQSKRTSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKREAPRTDNAGADVEKDGPKRQRESSPRRKPPSPRRRSPMPRRVGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRLRGSPGRRRSPPPPPRRRSPPRRARSPPRRSPISRRRSRSPVRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06629 422 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 277 - -
Seca4g06629 422 Gene3D - 15 194 IPR012677 -
Seca4g06629 422 MobiDBLite consensus disorder prediction 251 285 - -
Seca4g06629 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Seca4g06629 422 MobiDBLite consensus disorder prediction 47 67 - -
Seca4g06629 422 FunFam Serine/arginine-rich splicing factor SR45 3 195 - -
Seca4g06629 422 MobiDBLite consensus disorder prediction 303 373 - -
Seca4g06629 422 MobiDBLite consensus disorder prediction 1 108 - -
Seca4g06629 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Seca4g06629 422 MobiDBLite consensus disorder prediction 402 422 - -
Seca4g06629 422 SUPERFAMILY RNA-binding domain, RBD 97 195 IPR035979 GO:0003676
Seca4g06629 422 MobiDBLite consensus disorder prediction 187 422 - -
Seca4g06629 422 CDD RRM_RNPS1 112 184 IPR034201 -
Seca4g06629 422 MobiDBLite consensus disorder prediction 91 105 - -
Seca4g06629 422 MobiDBLite consensus disorder prediction 210 235 - -
Seca4g06629 422 MobiDBLite consensus disorder prediction 12 31 - -
Seca4g06629 422 SMART rrm1_1 111 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06629 Seca-Chr4 135182768 135188485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06629 112 185 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 3.86e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06629 K14325 - gmx:100783566 255.373