Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g06629 | ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCACCGTCGGGTTCCATTTCGGGCTCCTCTCGCTCCTCTTCCCCCTCAGATTCCCGCTCCTCCTCTCGCTCACGCTCTCGTTCTCGCTCCCGTTCTCGCTCCCGTTCTCCCTCTCGTTCCAGATCTTTCTCCTCCTCCTCCTCCCCCTCCCGCAGTTCCCGCAGCCGGAGCCGGAGCCCTCCCCCTCAGAGACGGAGAAGTCCTGCTGAAGCAGCTAGGCGAGGTCGATCTCCTCCTCCTCCTCAGTCTAAGAGAACTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTGCATGTAGAAAAACTCAGCAGGAATGTTAATGAGGGCCATTTGAAAGAAATTTTCAGTAATTTTGGCGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAGATAGATGGCAATGTCATTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGCTCCAAAGAGAGAGGCCCCTAGGACTGATAATGCTGGTGCAGATGTTGAAAAAGATGGGCCGAAGCGTCAAAGAGAATCTTCTCCTCGGAGAAAACCTCCCTCACCACGAAGGAGATCTCCTATGCCTCGAAGGGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTGCGTCGTCGTTTAGACTCTCCTCCTTATCGCCGTGGAGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGGAAGAGGTCGCTCTCCATCTCCACCTAGGCGCCTTAGATCCCCCGCAAGGGTCTCACCTAGAAGATTGCGTGGAAGCCCAGGTCGTAGACGTTCTCCTCCTCCTCCACCGAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATCAGTCGTAGGCGCAGTCGCTCTCCAGTACGTAGGTCTGCACGCTCACGCTCAAGATCATTCTCACCTCGCAGAGGTCGACCACCTGTGAGACGGGGGAGGTCATCATCTTACTCTGATTCACCAAGTCCACGCAAGGTATCCCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGCAGCAGCAGTAGTTCACCACCCCCAGCTCGCAAACCATAG | 1269 | 0.5422 | MAKPGRGRRSPPSGSISGSSRSSSPSDSRSSSRSRSRSRSRSRSRSPSRSRSFSSSSSPSRSSRSRSRSPPPQRRRSPAEAARRGRSPPPPQSKRTSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKREAPRTDNAGADVEKDGPKRQRESSPRRKPPSPRRRSPMPRRVGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRLRGSPGRRRSPPPPPRRRSPPRRARSPPRRSPISRRRSRSPVRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP. | 423 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g06629 | 422 | PANTHER | RIBONUCLEIC ACID BINDING PROTEIN S1 | 2 | 277 | - | - | |
Seca4g06629 | 422 | Gene3D | - | 15 | 194 | IPR012677 | - | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 251 | 285 | - | - | |
Seca4g06629 | 422 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 182 | IPR000504 | GO:0003723 | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 47 | 67 | - | - | |
Seca4g06629 | 422 | FunFam | Serine/arginine-rich splicing factor SR45 | 3 | 195 | - | - | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 303 | 373 | - | - | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
Seca4g06629 | 422 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 188 | IPR000504 | GO:0003723 | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 402 | 422 | - | - | |
Seca4g06629 | 422 | SUPERFAMILY | RNA-binding domain, RBD | 97 | 195 | IPR035979 | GO:0003676 | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 187 | 422 | - | - | |
Seca4g06629 | 422 | CDD | RRM_RNPS1 | 112 | 184 | IPR034201 | - | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 91 | 105 | - | - | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 210 | 235 | - | - | |
Seca4g06629 | 422 | MobiDBLite | consensus disorder prediction | 12 | 31 | - | - | |
Seca4g06629 | 422 | SMART | rrm1_1 | 111 | 184 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g06629 | Seca-Chr4 | 135182768 | 135188485 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g06629 | 112 | 185 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 33.784 | 3.86e-08 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g06629 | K14325 | - | gmx:100783566 | 255.373 |