Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06619 ATGGAGTTAAATAGTGATGATTCGGCTGTTAATCTGGATGATGATAGAGATTTTAGTTATAGTGATTCTTCTAGCTCTAGCGATGATGAAAATCATAATCAAAATGATAGAGTTATTGATTTTGAGGATGAAGTTAATGAAGAAGAGGTAGACACTGATGAGGGAAATGAAGCTATGGATGCAGAAGTTGGAGGGGAGGTGTCAAGGAGGATAATTGATTTAACAAGTGATGATATATGGGCATTGGAATTCTATAGTGAAAATGATGCTTTCAATTTTTACTTTTATTATGCAAGATGTCATGGATTTGCTGTGAGGAGGGATGATGTAATTAAAGACAATAAAGGTATGCTCATAATGCGACAATTCTTATGTAGTAGGGCTGGTTTTAGGGACAAAAAGCATTTGATTAGGTTAGATCGGAAAAAGGAACATAGGCCTCTTACTCGAACAAATTGTCAAGCTAAGTTGAGGGTTCGGTTTGATTATAAGACTGGGAAATTTAAGGTTATTTCCTTTTTAGACTCTCATAACCATGAATTGACCCCTGCTAAATTTGTACCTTTAATGCCTGCATCTCATGGTTTGAGTGATGGGGACAAAGCCCAAGTTGATGCATTGCATTCTCATGGTGTTAGACCTTGTCAGATAATGGGTTTTCTTGTTGATCAAAAAGGAGGTTATAGAAACGTCGGTTTTTCAAAGAAAGATTTATACAACTACATAGATGAGGTTAAGAGGGGTAAGATAAAATATGGGGATGCAGTGGCTGGGTTAAGTTATTTGCAAGGAAAGGCAGATAATAATCCAATGTTTTTTTCAAGATTTTTATGTTCTGAGGATGGGAAACTCACTCATCTGTTTTGGTGTGATGAAATAAGTCGGGCAGACTATCAATTTTTTGGTGATGTGCTTGCATTTTATGCAACCTACAAGAAGAATAGGTATAAATATCCATTGGTGATTTTTTCTGGTAAAAATCACCACTCTCAGACAATTATATTTGGGTGTGCACTCATTGCTGATGAAATAATCGATACTTATAAGTGGGTTTTAAGAATGTTTTCAGAAGCAATGTTCAACAAGCATCCAGCTGCAGTGGTGACTGATGGTGATGGTGCAATGAGGGAAGCTATTAAGGTAGTTTTTCCAAATGCATCTCATAGGTTATGCGGGTGGCATTTGAATAGAAATGCATGTGAAAATATTAAGAATCCTAAATTTTTGGATGAGTTCAAGAAAGCAATGTACAATAATTTCACACCAGAAAAATTTGAACAGTTTTGGGAGGAAATGGTAAATAAACATGGTCTACAAGGGATTAGATGGGTGTTGAAGACCTATGATATTAAGGAAATGTGGGCGTCCGCTTATTTGCGTGATAAATTCTTTGCCCGCATAAGAACTACATCTCAGTGTGAAGGCATAAATTCCTTGATAAAGACCTATGTTAGGAGTAAGAATACAATTAGTGAATTTATTCATAATTTTGAGCATTCTCTCAGGGAATATAGGTATAAAGAACTGACTTCAGACTTTAATTCTCTGTATACTGTACCCGTTCTCACTACTTCACTACAAAAGATTGAGAATCAAGCCTCTAAGGTTTTCACTTTGGATATTTTTAAAGATGTAAAGTATGAAATTGAAAAGGCAGGGGGATTAAATGTAATTGAACATTCAGTAGATGGTGAGAAAGTGATTTTCAAATTAAATAAATATTGTAAGCCTCAGAGTGAACATTTTGTTGTTTATGATAAAGAGAATTGTAAATTTATTTGTGATTGTCGGTTGTTTGAATCTTGTGGCATTCTTTGTCGACACATTTTTTGTGCCATGAGACTTGAGCACATAGACGCTATAACCCCCAAGTATGATTTGCAAGCGGTGGAGGAAGGATGTTAA 1905 0.3549 MELNSDDSAVNLDDDRDFSYSDSSSSSDDENHNQNDRVIDFEDEVNEEEVDTDEGNEAMDAEVGGEVSRRIIDLTSDDIWALEFYSENDAFNFYFYYARCHGFAVRRDDVIKDNKGMLIMRQFLCSRAGFRDKKHLIRLDRKKEHRPLTRTNCQAKLRVRFDYKTGKFKVISFLDSHNHELTPAKFVPLMPASHGLSDGDKAQVDALHSHGVRPCQIMGFLVDQKGGYRNVGFSKKDLYNYIDEVKRGKIKYGDAVAGLSYLQGKADNNPMFFSRFLCSEDGKLTHLFWCDEISRADYQFFGDVLAFYATYKKNRYKYPLVIFSGKNHHSQTIIFGCALIADEIIDTYKWVLRMFSEAMFNKHPAAVVTDGDGAMREAIKVVFPNASHRLCGWHLNRNACENIKNPKFLDEFKKAMYNNFTPEKFEQFWEEMVNKHGLQGIRWVLKTYDIKEMWASAYLRDKFFARIRTTSQCEGINSLIKTYVRSKNTISEFIHNFEHSLREYRYKELTSDFNSLYTVPVLTTSLQKIENQASKVFTLDIFKDVKYEIEKAGGLNVIEHSVDGEKVIFKLNKYCKPQSEHFVVYDKENCKFICDCRLFESCGILCRHIFCAMRLEHIDAITPKYDLQAVEEGC. 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06619 634 MobiDBLite consensus disorder prediction 41 56 - -
Seca4g06619 634 Pfam MULE transposase domain 305 398 IPR018289 -
Seca4g06619 634 SMART 26again6 592 619 IPR006564 GO:0008270
Seca4g06619 634 MobiDBLite consensus disorder prediction 9 40 - -
Seca4g06619 634 Pfam FAR1 DNA-binding domain 92 182 IPR004330 -
Seca4g06619 634 ProSiteProfiles Zinc finger SWIM-type profile. 582 617 IPR007527 GO:0008270
Seca4g06619 634 PANTHER OS01G0519700 PROTEIN 81 625 - -
Seca4g06619 634 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06619 Seca-Chr4 134950186 134952090 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g06619 MULE 6.2e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06619 - - ccaj:109811679 733.406