Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06601 ATGGCTTCCGAACGTGGAATAAGCCCCGAGACATTGGGGAAAGCTGTGGACTCTCTCCTCAAATGGCGCAAATCTCAATCAGAGACCCAAAAGCCAAAACTCTTCGACCAAGACGAAGAGTTCGTTTACCTCGTCCTTACACTCAAGAAAATCCCACAAAAGGGTCGCGTTAACCCTCACAAGATCCCTCTCCCTCACTCCCTCCTATCCCCTTTCTCCGAACAGCTGCTCATCCTCGACGACAGGCCCAACAAGGCCCGCATCACAAAACCCCAGGCCCAGAAGAAGATCCAATCTGAGTCCATCCCCATCTCGAAGGTCCTCAAGCTCTCTAAGCTCGCCTCCGATTACCGTCCCTTCGAAGCCAAGCGGAAGCTCTGCGATTCGTACGATCTCTTCTTCGCCGAAAAGAGCATCGTTCCCCTCCTGCCGCGGTTGCTCGGGAAGCAGTTTTTCAAGAAGCGGAAGATTCCGGTGCCGTTGGATTTGAAGAAGAATAACTGGAAGGAGCAGGTGGAGAGGGCGTGTTCTGCGGCGATGTTGTTCTTGAGGACGGGGACTTGTAGTGTTGTTAGGGTTGCTAAGCTGAGCATGGAAAGGGATGAGATTGTGGAAAATCTGGTTGCTGCTATTGATGGTGTTGTTGAGGTTGTTCCCAAGAAGTGGGGTAATGTGAGGTCGTTTCATGTGAAGTTGTTGGATTCAATTGCCTTGCCGATTTATCAGGTTCTTCCTGATTTGAAGTTGAAAATTGAGGGAGCAAAGTCCGAGATGGAGGCGCAGGAGAAGAAGGAGAAGGATGAGGCTGGAGAGATTCGCGAGGAGAAGAAGAAGAAGAAGAGGGGGAGGATTCATGAAGTTAGGTACATGGATGATAAAGTGGGTGAGGATGAGTCTGGGAGTGATGATGATGGTGGTGGTGATAACAATGATGAGGTTGGCAATGCGGACTATGGTGTGGAAGATGATTCTGAGGATAATGAAAAGGGGAGTGGAGGATTGGTGAATAAGAAGAGGAAGAAAGGAATTAAAGCGGAGAAAGTGTCTCCAACTCCAAGTGTCAAAAAATTGAAGGAATCTCCCAAGGAAGGTGTCAAGCGTAAGAAGAAAGATAATGAAGGATTGGTCAAGAAGAGTGAAGATAAATCACCTGTTAAAGATGAGGGGTCGGGCAAGAAGAAGAAAAGAGTCGATATGAATGTAAAGGCTAAGAGAAGTAAGAAGGCTGCCTGA 1233 0.4826 MASERGISPETLGKAVDSLLKWRKSQSETQKPKLFDQDEEFVYLVLTLKKIPQKGRVNPHKIPLPHSLLSPFSEQLLILDDRPNKARITKPQAQKKIQSESIPISKVLKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKQFFKKRKIPVPLDLKKNNWKEQVERACSAAMLFLRTGTCSVVRVAKLSMERDEIVENLVAAIDGVVEVVPKKWGNVRSFHVKLLDSIALPIYQVLPDLKLKIEGAKSEMEAQEKKEKDEAGEIREEKKKKKRGRIHEVRYMDDKVGEDESGSDDDGGGDNNDEVGNADYGVEDDSEDNEKGSGGLVNKKRKKGIKAEKVSPTPSVKKLKESPKEGVKRKKKDNEGLVKKSEDKSPVKDEGSGKKKKRVDMNVKAKRSKKAA. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06601 410 Gene3D - 86 178 IPR016095 -
Seca4g06601 410 Pfam Ribosomal protein L1p/L10e family 20 235 IPR028364 -
Seca4g06601 410 FunFam Ribosomal protein L1p/L10e family 86 177 - -
Seca4g06601 410 SUPERFAMILY Ribosomal protein L1 21 241 IPR023674 -
Seca4g06601 410 CDD Ribosomal_L1 14 240 IPR028364 -
Seca4g06601 410 MobiDBLite consensus disorder prediction 296 324 - -
Seca4g06601 410 MobiDBLite consensus disorder prediction 257 410 - -
Seca4g06601 410 MobiDBLite consensus disorder prediction 351 396 - -
Seca4g06601 410 Coils Coil 244 278 - -
Seca4g06601 410 MobiDBLite consensus disorder prediction 257 277 - -
Seca4g06601 410 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 14 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06601 Seca-Chr4 134562722 134564899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06601 129 231 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 30.097 3.56e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06601 K14775 - gmx:100782862 502.286