Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06600 ATGAGCAACATAAGCATGGTAGAGGCAAAATTGCCACCAGGGTTCAGGTTCCATCCTAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACACACAGTGATTCCCTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTACACACAGAGAGATAGAAAGTATGCAACAGGGCTGCGAACAAATCGTGCCACTGCCTCAGGCTATTGGAAGGCCACAGGGAAGGACAGACCAATCCTTCGTAAGGGCACCCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGAAGAAAAACTGAGTGGGTCATGCATGAGTTTCGCATTGAGGGTCCCCATGGACCTCCCAAAATTTCTTCTTCCAAGGTAAATTATAAGTATTATCAACACACTCCATAA 474 0.4536 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKVNYKYYQHTP. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06600 157 ProSiteProfiles NAC domain profile. 11 151 IPR003441 GO:0003677|GO:0006355
Seca4g06600 157 Gene3D NAC domain 20 153 IPR036093 GO:0003677|GO:0006355
Seca4g06600 157 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 135 - -
Seca4g06600 157 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Seca4g06600 157 SUPERFAMILY NAC domain 2 139 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06600 Seca-Chr4 134549410 134554796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06600 2 146 NAC Transcription Factor Family AT1G56010 78.378 3.57e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g06600 NAM 2.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06600 - - gmx:100170720 307.375