Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06594 ATGACCTGTTTTCCTTTCTCATTCAGTAAAGGTTCTTCTTCAGCAAGACAAAATCCAGAAATTGATGAAGGTATTCATAATGTTAAAATATACACCTACAAAGAACTAAGAAATGCCACTGATGATTTTAGTCCGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAGTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTAAATGAGTTCCTGACAGAGATTAATGTGATCTCTGAAATAGAGCATGAAAATTTGGTGAAGTTATATGGTTGTTGTGTGGAAAGAAATAACAGAATATTAGTCTACAACTACCTTGAAAATAACAGCCTTGCACAAACTCTTCTAGGTAAATACATAGGTGGAGGTCACAGTGGTATCTACTTTGATTGGAGAACACGATCTAGAATATGCATTGGGATTGCACGTGGGCTTGCCTTTCTTCATGAAGAAGTAAGGCCTCTTATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGCTACTTGGCACCAGAGTATGCAATAGGAGGGAGGCTAACACGAAAAGCAGATATTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGTAATACAAATTCACGATTACCAATAGAAGAACAGTTTCTTCTTGAGAGGGCATGGGAATTTTATGAACGAGAGGAATTAGTAGGGCTGGTAGATACATCACTAAATGGAGAATTTGATGCTGAGCAGGCTTGTAATTTTCTGAAGACTGGCCTTCTTTGCACTCAGGAATCTCCAAAGCAACGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATTAATGTTGATGAAAGTACCATAACAAAACCAGCCTTAATTTCTGATTTTATGGATCTCAAAGTTAGAAAGAAAGAGGAATATGATATTGGTACAAAGACTTTATCTACATTCAATACATCCTCTTCCTCAGACTACCAGGACACTACCATGTCATCAGCTACAACTACAACCTTCACTGCAAAATATGATCAAAGCATATAA 1167 0.3856 MTCFPFSFSKGSSSARQNPEIDEGIHNVKIYTYKELRNATDDFSPANKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVNEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLENNSLAQTLLGKYIGGGHSGIYFDWRTRSRICIGIARGLAFLHEEVRPLIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERAWEFYEREELVGLVDTSLNGEFDAEQACNFLKTGLLCTQESPKQRPSMSSVVKMLTGKINVDESTITKPALISDFMDLKVRKKEEYDIGTKTLSTFNTSSSSDYQDTTMSSATTTTFTAKYDQSI. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06594 388 ProSiteProfiles Protein kinase domain profile. 43 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06594 388 SUPERFAMILY Protein kinase-like (PK-like) 20 318 IPR011009 -
Seca4g06594 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 360 - -
Seca4g06594 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca4g06594 388 CDD STKc_IRAK 49 320 - -
Seca4g06594 388 Pfam Protein kinase domain 46 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06594 388 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Seca4g06594 388 Gene3D Transferase(Phosphotransferase) domain 1 119 336 - -
Seca4g06594 388 FunFam cold-responsive protein kinase 1 14 118 - -
Seca4g06594 388 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Seca4g06594 388 SMART serkin_6 43 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06594 388 FunFam cold-responsive protein kinase 1 119 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06594 Seca-Chr4 134341495 134346244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06594 31 372 Receptor kinase-like Gene Family AT1G53430 51.312 8.08e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06594 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06594 - - gmx:100782320 632.098