Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g06588 | ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCCCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCCCATTCTGTTGTGAGGAGAGTGTCTCTTTCTAGAAGGAACTGTAAGGGGAACAGGAGATGGCATTGTGTCTCCTTGTCTGTCTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACTGTAGTAGTAAAGGTGGAGATAATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAAGCCTGTGTTAAAGAGTGACCCCATCTTAAGCTCTAGTTCTCAACGTTTGGGCCCATCAAGGAATACTGAGGATTCTGATGATGTAGAAGAAAGGAATAAAGTGATTGAATCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGGAAATTCTAATATGGATGGTGAAAAAAATAATGGTTCAGTAAATAAACCAGCAAGATCAAATATGAATGCTAATCCTAAGGCTGATAAACCAGTAAATTCAACAAAATCCCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACTCGGTTGCAACTGTGCAAAAGATTGTGAAGGAAGTACCGAGGCCTGATAACAAGAATGAAGTGGGGAAATCTCAAACAGGGGGAGGGGAGAAGGTAACATCTCAGTCTCGTGCTCCTCAGCCTCCTTCAAAACCTCAACCAATGTTACAAACTAAGCCTTCTATAGCCCCCCCACCTATAAAAAGACCTGTTGTCTTGAAGGATAAGGGGCAAGCTGACACATCTGTTAGATCTAAAGAAAAGAAGTCGCCCATCTTGGTTGATAAGTTTGCTACCAAGAAACCAGTTGTTGACCCTCTAATTGCTCAAGCAGTTCTAGCTCCTCCAAAACCAGGGAAGGCCCTTGCCCCAGGAAAGTTCAAAGAGGATTACCGGAAAAAAGGTGCTCCAGCTGGGGGACTAAGAAGACGAATGGTAGAGGATGATGATGTGATTCCTGATGAGGACACATCAGAGCTCAATGTCTCTATACCTGGTGCTGCAACAACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTCCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTTTAGAGGTTGGTGACCAAGGTATGCTGGTGGAGGATTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTATCTATACTCTATGGGGATTAAACCAGATGGGGTGCAAACCATAGACAAAGACATGGTGAAGATGATATGTAAAGAGTATAATGTTGAAGTCATAGATGCTGATCCTGTCAAAGTTGAAGGATTGGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGACAGGCCTCCTGTCATTACTATTATGGGCCATGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGACCAAGGTAGCTTCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACAGTTACCCTGTGTTTTCCTTGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCGCGTGGAGCAAGTGTAACAGACATTGCCATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCTATAAACAAGGCAGGCCAACATGATATAGATAAAGATGGAGCAAATCCAGATCGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAGGACTGGGGTGGTGACATCCCAATGGTTCAGATAAGTGCTCTTCAAGGGAAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCAGGGCTAGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGCACCCTTAGAAGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGTGTTGATGTGGGTACACCTTCTATACCAGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGAGCAGAGTCCCGCGCTGAGTCATTGCGAAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCTGCAGTTTCAGCAGGAAAGCTTTCTGGACTAGACTTGCACCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAGACAAGCCCTGCGGGTGCTACCCCAAGATAATGTCACACTAAAGTTTTTGTTGGAAGCAACAGGTGATGTAACCACAAGTGATGTTGACCTTGCGGTTGCCAGCAAAGCTGTTATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTCAAAACCTATGCAGAAAATAAAGCTGTTGAGATTAGAGTGTATAAAGTTATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCTTGGATCCTGTTGAGGATCAAATAACAATTGGCTCAGCAGAAGTACGGGCCACGTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGTATGGTTACAGAGGGAAAGGTACTGAAAGGCTGCGGTATTCGGGTCATTCGGAAGGGAAAAGTTGTTCATGTTGGCATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTTAATGCTGGTCTTGAGTGTGGACTTGCGTTAGAAGATTTTGATGATTGGGAAGATGGTGATATTCTTGAAGCCTTCAACTCAGTTCAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCAGTGGAGGAAGTAGGAGTTTAA | 3027 | 0.4381 | MLILVGNVQGTMSSLASPVSLGSLMGVSSSGRSHSVVRRVSLSRRNCKGNRRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNCSSKGGDNSAGFVLKPPPKPVLKSDPILSSSSQRLGPSRNTEDSDDVEERNKVIESLGEVLEKAEKLGNSNMDGEKNNGSVNKPARSNMNANPKADKPVNSTKSQKSKTLKSVWRKGDSVATVQKIVKEVPRPDNKNEVGKSQTGGGEKVTSQSRAPQPPSKPQPMLQTKPSIAPPPIKRPVVLKDKGQADTSVRSKEKKSPILVDKFATKKPVVDPLIAQAVLAPPKPGKALAPGKFKEDYRKKGAPAGGLRRRMVEDDDVIPDEDTSELNVSIPGAATTRKGRKWSKASRKAARLQAAKDAAPVKVEILEVGDQGMLVEDLAYNLAISEGEILGYLYSMGIKPDGVQTIDKDMVKMICKEYNVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVASSEAGGITQGIGAYKVQVPVDGKQLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKAGQHDIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALQGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDVGTPSIPVIGLNNVPIAGDEFEVVESLDTARERAESRAESLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNIILKVDLQGSIEAVRQALRVLPQDNVTLKFLLEATGDVTTSDVDLAVASKAVIFGFNVKAPGSVKTYAENKAVEIRVYKVIYELIDDVRNAMEGLLDPVEDQITIGSAEVRATFSSGSGRVAGCMVTEGKVLKGCGIRVIRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLALEDFDDWEDGDILEAFNSVQKKRTLEEASASMAAAVEEVGV. | 1009 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g06588 | 1008 | SUPERFAMILY | Translation proteins | 659 | 741 | IPR009000 | - | |
Seca4g06588 | 1008 | MobiDBLite | consensus disorder prediction | 267 | 282 | - | - | |
Seca4g06588 | 1008 | NCBIfam | translation initiation factor IF-2 | 400 | 992 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Seca4g06588 | 1008 | Gene3D | Translation factors | 895 | 991 | - | - | |
Seca4g06588 | 1008 | PRINTS | GTP-binding elongation factor signature | 534 | 544 | IPR000795 | GO:0003924|GO:0005525 | |
Seca4g06588 | 1008 | PRINTS | GTP-binding elongation factor signature | 482 | 495 | IPR000795 | GO:0003924|GO:0005525 | |
Seca4g06588 | 1008 | PRINTS | GTP-binding elongation factor signature | 550 | 561 | IPR000795 | GO:0003924|GO:0005525 | |
Seca4g06588 | 1008 | PRINTS | GTP-binding elongation factor signature | 586 | 595 | IPR000795 | GO:0003924|GO:0005525 | |
Seca4g06588 | 1008 | Hamap | Translation initiation factor IF-2 [infB]. | 7 | 990 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Seca4g06588 | 1008 | FunFam | Translation initiation factor IF-2 | 789 | 894 | - | - | |
Seca4g06588 | 1008 | NCBIfam | small GTP-binding protein domain | 480 | 646 | IPR005225 | GO:0005525 | |
Seca4g06588 | 1008 | Gene3D | Translation factors | 659 | 773 | - | - | |
Seca4g06588 | 1008 | CDD | mtIF2_IVc | 900 | 982 | - | - | |
Seca4g06588 | 1008 | Coils | Coil | 740 | 767 | - | - | |
Seca4g06588 | 1008 | MobiDBLite | consensus disorder prediction | 91 | 133 | - | - | |
Seca4g06588 | 1008 | FunFam | Translation initiation factor IF-2 | 894 | 991 | - | - | |
Seca4g06588 | 1008 | MobiDBLite | consensus disorder prediction | 220 | 240 | - | - | |
Seca4g06588 | 1008 | MobiDBLite | consensus disorder prediction | 148 | 282 | - | - | |
Seca4g06588 | 1008 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 160 | 998 | IPR015760 | - | |
Seca4g06588 | 1008 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 788 | 900 | IPR036925 | - | |
Seca4g06588 | 1008 | CDD | IF2_mtIF2_II | 663 | 755 | IPR044145 | - | |
Seca4g06588 | 1008 | Pfam | Translation initiation factor IF-2, N-terminal region | 403 | 449 | IPR006847 | - | |
Seca4g06588 | 1008 | FunFam | Translation initiation factor IF-2 | 659 | 775 | - | - | |
Seca4g06588 | 1008 | FunFam | Translation initiation factor IF-2 | 475 | 658 | - | - | |
Seca4g06588 | 1008 | Pfam | Elongation factor Tu GTP binding domain | 483 | 648 | IPR000795 | GO:0003924|GO:0005525 | |
Seca4g06588 | 1008 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 472 | 659 | IPR027417 | - | |
Seca4g06588 | 1008 | Gene3D | - | 789 | 893 | IPR036925 | - | |
Seca4g06588 | 1008 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 478 | 656 | IPR000795 | GO:0003924|GO:0005525 | |
Seca4g06588 | 1008 | MobiDBLite | consensus disorder prediction | 154 | 191 | - | - | |
Seca4g06588 | 1008 | Gene3D | - | 475 | 658 | IPR027417 | - | |
Seca4g06588 | 1008 | SUPERFAMILY | Translation proteins | 897 | 990 | IPR009000 | - | |
Seca4g06588 | 1008 | CDD | IF2_eIF5B | 481 | 652 | - | - | |
Seca4g06588 | 1008 | ProSitePatterns | Initiation factor 2 signature. | 943 | 965 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Seca4g06588 | 1008 | Pfam | Translation-initiation factor 2 | 789 | 882 | IPR023115 | - | |
Seca4g06588 | 1008 | MobiDBLite | consensus disorder prediction | 241 | 261 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g06588 | Seca-Chr4 | 134247498 | 134256846 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g06588 | 457 | 698 | Eukaryotic Initiation Factors Gene Family | AT1G76810 | 34.035 | 1.44e-26 | 115 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g06588 | K02519 | - | gmx:100778924 | 1538.86 |