Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06588 ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCCCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCCCATTCTGTTGTGAGGAGAGTGTCTCTTTCTAGAAGGAACTGTAAGGGGAACAGGAGATGGCATTGTGTCTCCTTGTCTGTCTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACTGTAGTAGTAAAGGTGGAGATAATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAAGCCTGTGTTAAAGAGTGACCCCATCTTAAGCTCTAGTTCTCAACGTTTGGGCCCATCAAGGAATACTGAGGATTCTGATGATGTAGAAGAAAGGAATAAAGTGATTGAATCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGGAAATTCTAATATGGATGGTGAAAAAAATAATGGTTCAGTAAATAAACCAGCAAGATCAAATATGAATGCTAATCCTAAGGCTGATAAACCAGTAAATTCAACAAAATCCCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACTCGGTTGCAACTGTGCAAAAGATTGTGAAGGAAGTACCGAGGCCTGATAACAAGAATGAAGTGGGGAAATCTCAAACAGGGGGAGGGGAGAAGGTAACATCTCAGTCTCGTGCTCCTCAGCCTCCTTCAAAACCTCAACCAATGTTACAAACTAAGCCTTCTATAGCCCCCCCACCTATAAAAAGACCTGTTGTCTTGAAGGATAAGGGGCAAGCTGACACATCTGTTAGATCTAAAGAAAAGAAGTCGCCCATCTTGGTTGATAAGTTTGCTACCAAGAAACCAGTTGTTGACCCTCTAATTGCTCAAGCAGTTCTAGCTCCTCCAAAACCAGGGAAGGCCCTTGCCCCAGGAAAGTTCAAAGAGGATTACCGGAAAAAAGGTGCTCCAGCTGGGGGACTAAGAAGACGAATGGTAGAGGATGATGATGTGATTCCTGATGAGGACACATCAGAGCTCAATGTCTCTATACCTGGTGCTGCAACAACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTCCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTTTAGAGGTTGGTGACCAAGGTATGCTGGTGGAGGATTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTATCTATACTCTATGGGGATTAAACCAGATGGGGTGCAAACCATAGACAAAGACATGGTGAAGATGATATGTAAAGAGTATAATGTTGAAGTCATAGATGCTGATCCTGTCAAAGTTGAAGGATTGGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGACAGGCCTCCTGTCATTACTATTATGGGCCATGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGACCAAGGTAGCTTCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACAGTTACCCTGTGTTTTCCTTGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCGCGTGGAGCAAGTGTAACAGACATTGCCATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCTATAAACAAGGCAGGCCAACATGATATAGATAAAGATGGAGCAAATCCAGATCGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAGGACTGGGGTGGTGACATCCCAATGGTTCAGATAAGTGCTCTTCAAGGGAAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCAGGGCTAGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGCACCCTTAGAAGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGTGTTGATGTGGGTACACCTTCTATACCAGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGAGCAGAGTCCCGCGCTGAGTCATTGCGAAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCTGCAGTTTCAGCAGGAAAGCTTTCTGGACTAGACTTGCACCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAGACAAGCCCTGCGGGTGCTACCCCAAGATAATGTCACACTAAAGTTTTTGTTGGAAGCAACAGGTGATGTAACCACAAGTGATGTTGACCTTGCGGTTGCCAGCAAAGCTGTTATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTCAAAACCTATGCAGAAAATAAAGCTGTTGAGATTAGAGTGTATAAAGTTATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCTTGGATCCTGTTGAGGATCAAATAACAATTGGCTCAGCAGAAGTACGGGCCACGTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGTATGGTTACAGAGGGAAAGGTACTGAAAGGCTGCGGTATTCGGGTCATTCGGAAGGGAAAAGTTGTTCATGTTGGCATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTTAATGCTGGTCTTGAGTGTGGACTTGCGTTAGAAGATTTTGATGATTGGGAAGATGGTGATATTCTTGAAGCCTTCAACTCAGTTCAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCAGTGGAGGAAGTAGGAGTTTAA 3027 0.4381 MLILVGNVQGTMSSLASPVSLGSLMGVSSSGRSHSVVRRVSLSRRNCKGNRRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNCSSKGGDNSAGFVLKPPPKPVLKSDPILSSSSQRLGPSRNTEDSDDVEERNKVIESLGEVLEKAEKLGNSNMDGEKNNGSVNKPARSNMNANPKADKPVNSTKSQKSKTLKSVWRKGDSVATVQKIVKEVPRPDNKNEVGKSQTGGGEKVTSQSRAPQPPSKPQPMLQTKPSIAPPPIKRPVVLKDKGQADTSVRSKEKKSPILVDKFATKKPVVDPLIAQAVLAPPKPGKALAPGKFKEDYRKKGAPAGGLRRRMVEDDDVIPDEDTSELNVSIPGAATTRKGRKWSKASRKAARLQAAKDAAPVKVEILEVGDQGMLVEDLAYNLAISEGEILGYLYSMGIKPDGVQTIDKDMVKMICKEYNVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVASSEAGGITQGIGAYKVQVPVDGKQLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKAGQHDIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALQGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDVGTPSIPVIGLNNVPIAGDEFEVVESLDTARERAESRAESLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNIILKVDLQGSIEAVRQALRVLPQDNVTLKFLLEATGDVTTSDVDLAVASKAVIFGFNVKAPGSVKTYAENKAVEIRVYKVIYELIDDVRNAMEGLLDPVEDQITIGSAEVRATFSSGSGRVAGCMVTEGKVLKGCGIRVIRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLALEDFDDWEDGDILEAFNSVQKKRTLEEASASMAAAVEEVGV. 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06588 1008 SUPERFAMILY Translation proteins 659 741 IPR009000 -
Seca4g06588 1008 MobiDBLite consensus disorder prediction 267 282 - -
Seca4g06588 1008 NCBIfam translation initiation factor IF-2 400 992 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Seca4g06588 1008 Gene3D Translation factors 895 991 - -
Seca4g06588 1008 PRINTS GTP-binding elongation factor signature 534 544 IPR000795 GO:0003924|GO:0005525
Seca4g06588 1008 PRINTS GTP-binding elongation factor signature 482 495 IPR000795 GO:0003924|GO:0005525
Seca4g06588 1008 PRINTS GTP-binding elongation factor signature 550 561 IPR000795 GO:0003924|GO:0005525
Seca4g06588 1008 PRINTS GTP-binding elongation factor signature 586 595 IPR000795 GO:0003924|GO:0005525
Seca4g06588 1008 Hamap Translation initiation factor IF-2 [infB]. 7 990 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Seca4g06588 1008 FunFam Translation initiation factor IF-2 789 894 - -
Seca4g06588 1008 NCBIfam small GTP-binding protein domain 480 646 IPR005225 GO:0005525
Seca4g06588 1008 Gene3D Translation factors 659 773 - -
Seca4g06588 1008 CDD mtIF2_IVc 900 982 - -
Seca4g06588 1008 Coils Coil 740 767 - -
Seca4g06588 1008 MobiDBLite consensus disorder prediction 91 133 - -
Seca4g06588 1008 FunFam Translation initiation factor IF-2 894 991 - -
Seca4g06588 1008 MobiDBLite consensus disorder prediction 220 240 - -
Seca4g06588 1008 MobiDBLite consensus disorder prediction 148 282 - -
Seca4g06588 1008 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 160 998 IPR015760 -
Seca4g06588 1008 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 788 900 IPR036925 -
Seca4g06588 1008 CDD IF2_mtIF2_II 663 755 IPR044145 -
Seca4g06588 1008 Pfam Translation initiation factor IF-2, N-terminal region 403 449 IPR006847 -
Seca4g06588 1008 FunFam Translation initiation factor IF-2 659 775 - -
Seca4g06588 1008 FunFam Translation initiation factor IF-2 475 658 - -
Seca4g06588 1008 Pfam Elongation factor Tu GTP binding domain 483 648 IPR000795 GO:0003924|GO:0005525
Seca4g06588 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 659 IPR027417 -
Seca4g06588 1008 Gene3D - 789 893 IPR036925 -
Seca4g06588 1008 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 478 656 IPR000795 GO:0003924|GO:0005525
Seca4g06588 1008 MobiDBLite consensus disorder prediction 154 191 - -
Seca4g06588 1008 Gene3D - 475 658 IPR027417 -
Seca4g06588 1008 SUPERFAMILY Translation proteins 897 990 IPR009000 -
Seca4g06588 1008 CDD IF2_eIF5B 481 652 - -
Seca4g06588 1008 ProSitePatterns Initiation factor 2 signature. 943 965 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Seca4g06588 1008 Pfam Translation-initiation factor 2 789 882 IPR023115 -
Seca4g06588 1008 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06588 Seca-Chr4 134247498 134256846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06588 457 698 Eukaryotic Initiation Factors Gene Family AT1G76810 34.035 1.44e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06588 K02519 - gmx:100778924 1538.86