Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06587 ATGGGGGATGATGAACGGCATTTCTATGACCATGATCCACTTCTTCTCACGGACGTTTCTTTGCAACAAGAAATCTCTTCCACCACTACTCACTGCTCCAATTACGTTTCTCAAACCTCACTGAGCTCTCGGAATTCGGCTATGGCGGAGGATCCTCAATCTCGTGGTGACAGCCCAAGTTACAGACTCTCTCGGGAAAATGGAAGCTTTGGAAGGAAAAGTGTGCAATTTGATGACCCAGTTGTGAAAAATGTGTTTGATGGACGATCGATGTTGGGGTATTCTCTGACTTCCCCAGATTTGGTCATCTGTGCTGGCTCACCAGATATTGCTGGAATGAGCTATGATGACTCTCCTGAGTTGTTGAATAGCAAATGTGGTAAGAATTTGGAGTCATCTATGGAGCTTTCTCTAGAGAATGGAATCAATGGGTCTGAAGTTGAAGTTGGCAATGGCCATAAGACCCCAACTGTTAAATTCTCCAATTTGTGTCAAACTTTTGAACAAGAGGAAGAGCTTCTATCCCCTGAAGCCTCCTTTGAGCTTCTTCCACCACCTGTAACCAAGGTTGAGTCACCCCAAGACTGCTCTCCAAGAGATGATGAAATGCTAGAAGATGCTGGAGTGTCTCAGGAGGCGGAATTGGAGTCCTCTGAGGATGCTGAGGATATTGGGGTGGAAGAGAAGTTTCAGAAGCTGAAGAGAGACTTTGAGAGTCAGAGAAAGGAGCTGGCAGAAACAAGGAGGGAGTTGGGGGAGATCAAGAGGGAGAATCAACAGAAGAGTAGAGAATGCCAAGAAGCATGGGACTCCTTAAAAGAGCTTCAGAATGAGCTAATGCGCAAGTCCATGCACGTAGGATCTTTGGCATTTGCCATTGAGGGGCAAGTGAAGGAGAAAAGCAGGTGGTTTTCATCACTAAGAGACTTGATGAGGAAAGTGAAGATTATGAAAATGGAGCACATCAAGCTATTAGAGGAAGCAGAAGCATACAAGAAATGTGAAGCAGATATGCTTGAAATGGGGCTTATCATCAAGTCTAAAATAAATGAACAACAGGAGTCACATGAAGATCTCAAGTCCAAATATATTGAAGGGGCTAAGGAACGAAAAGAGCTTTACAATAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGGTGTAGGCCTCTCAATGCTGATGAGATAAAAGCAGGAGCCACAATGGCCTTAGATTTTGATTCTGATAAAGATGGTGAGCTTACTGTTTTGTCAAATGGAGTTCCTAGAAAGACTTTTAAGTTTGATGCTGTCTTTGGCCCCCAAGCTGAACAAGCCGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGGTACAATGTATGCATTTTTGCATATGGACAGACTGGGACTGGAAAAACTTTCACAATGGAGGGCACAGAAGAAGCTCGTGGAGTTAATTTCAGAACTCTTGAGAAAATGTTTGACATAATCAAGGAGAGACAAACACTCTATCGTTATGATATCTCTGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTTCAGGAAATCAGCCAGGAATGGCTGCAAGAAGACTAGAAATAAGACAAGCTGGTGAAGGAATGCATCACATTCCTGGGTTGGTTGAGGCACATGTGAACAACATGACTGAAGTCTGGGAAGTCCTACAAACTGGTAGCAATGCAAGGGCTGTAAGCTCAACCAATGCCAATGAGCACAGCAGCCGATCCCACTGCATTCACTGTGTTATGGTAAAAGGGGAGAATTTGTTGAATGGGGAACACACCAGAAGCAAGTTATGGCTGGTGGACCTAGCAGGCAGTGAACGAGTTGCAAAGACAGAAGTGCAAGGTGATCGACTGAAGGAGACACAAAACATCAATAGGTCTCTGTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACTAAAAGTTCACACATCCCTTTCAGGAATTCCAAGCTTACCCACTTGCTGCAAGACTCATTAGGGGGAGATTCAAAGGCACTCATGTTTGTTCAGATCAGTCCTAATGAAAATGATTTGAGCGAGACAATTTGTTCTCTGAACTTTGCTAGTAGAGTAAGGGGAATAGAATTGGGCCCTGCTAAAAAGCAGTTAGACACTACTGAACTTCTGAAACACAAACAGATGGCTGAGAAAACCAAACAAGAGGTAAAGCTGAAGGATTTGCAAATCAAGAAGATGGAGGAAACAATCCATGGATTAGAGTCCAAGATGAAGGATAGAGATAATAAAAACAAAAATCTGCAAGAAAAGGTCAAGGAACTGGAATCACAACTTATGATTGAGAGAAAACTAGCACGTCAACATGTAGACTCAAAGATAGCTGAGCAGCATCAAATGAAACACCAAGAAGAGCAAAACAATGCACTTAATAGATCAGCACTTGCAAATCGACCTCTAGGAAGTCTCAAGAATTTCAATGATCCAGCTAGTGTTGGATGGTGCAAAGACCAAGTAAATTCAGCTAGACCACTTATGGAGAACAACATCTTAAAACCTTGTATACCCTTTACTACAATGGAGAATTCCATCAAGTGCATTGATCATGCTGAGAAAGAAAACAACCCTGACATGGCTGAAAAAACACTACTTCAAAAAAGGACTGGAAGAGCTTCTATCTGCACAATGACACCACGTGTTCCTTCAGCAATTGCTTCAAGGCGCAATTCTCTGATTCCACTTCCAACTGTACCGAGCTTAACACAGCTCCAATCACCATTACTACCCAAGTTAACATACCAAGGTGATTATTATCAGAAAGATGTCAATGGGGAATCAGAAACCAGCTGTTTGCCTGCACAGACTCTTTCTGAGAGTCCCAAAGAAGTTAGAAGTGGTGTTAAGAAGATAGGTAGCATACTAAGAAGAAGCATACATAAGAAAATGCAGGTAAAGTCTCCACTGCAGCAACATATGAGAAGGGTTGGTGTAAATGTAGGGATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGAGGAAGATTGACACAAAGGGTGCAAGTGGGAAGTGGTAGAAGAGGTGGAGCTAAAGAGATCCAACAAAAGAATAGTCAAAAGGAAAAGGAAAGGGGATGGATATGA 3138 0.4254 MGDDERHFYDHDPLLLTDVSLQQEISSTTTHCSNYVSQTSLSSRNSAMAEDPQSRGDSPSYRLSRENGSFGRKSVQFDDPVVKNVFDGRSMLGYSLTSPDLVICAGSPDIAGMSYDDSPELLNSKCGKNLESSMELSLENGINGSEVEVGNGHKTPTVKFSNLCQTFEQEEELLSPEASFELLPPPVTKVESPQDCSPRDDEMLEDAGVSQEAELESSEDAEDIGVEEKFQKLKRDFESQRKELAETRRELGEIKRENQQKSRECQEAWDSLKELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLMRKVKIMKMEHIKLLEEAEAYKKCEADMLEMGLIIKSKINEQQESHEDLKSKYIEGAKERKELYNKVLELRGNIRVFCRCRPLNADEIKAGATMALDFDSDKDGELTVLSNGVPRKTFKFDAVFGPQAEQADIFEDTAPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKMFDIIKERQTLYRYDISVSVLEVYNEQIRDLLVSGNQPGMAARRLEIRQAGEGMHHIPGLVEAHVNNMTEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLLNGEHTRSKLWLVDLAGSERVAKTEVQGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPAKKQLDTTELLKHKQMAEKTKQEVKLKDLQIKKMEETIHGLESKMKDRDNKNKNLQEKVKELESQLMIERKLARQHVDSKIAEQHQMKHQEEQNNALNRSALANRPLGSLKNFNDPASVGWCKDQVNSARPLMENNILKPCIPFTTMENSIKCIDHAEKENNPDMAEKTLLQKRTGRASICTMTPRVPSAIASRRNSLIPLPTVPSLTQLQSPLLPKLTYQGDYYQKDVNGESETSCLPAQTLSESPKEVRSGVKKIGSILRRSIHKKMQVKSPLQQHMRRVGVNVGMEKVRVSIGSRGRLTQRVQVGSGRRGGAKEIQQKNSQKEKERGWI. 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06587 1045 CDD KISc_C_terminal 381 711 - -
Seca4g06587 1045 MobiDBLite consensus disorder prediction 1031 1045 - -
Seca4g06587 1045 Coils Coil 730 785 - -
Seca4g06587 1045 MobiDBLite consensus disorder prediction 183 222 - -
Seca4g06587 1045 PANTHER KINESIN-LIKE PROTEIN KLP-3 175 861 IPR027640 GO:0003777|GO:0007018
Seca4g06587 1045 SMART kinesin_4 381 717 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 MobiDBLite consensus disorder prediction 207 222 - -
Seca4g06587 1045 ProSiteProfiles Kinesin motor domain profile. 383 709 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 747 IPR027417 -
Seca4g06587 1045 MobiDBLite consensus disorder prediction 1010 1045 - -
Seca4g06587 1045 MobiDBLite consensus disorder prediction 36 67 - -
Seca4g06587 1045 Gene3D Kinesin motor domain 328 711 IPR036961 -
Seca4g06587 1045 FunFam kinesin-like protein KIN-14R 328 711 - -
Seca4g06587 1045 Pfam Kinesin motor domain 389 709 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 Coils Coil 230 278 - -
Seca4g06587 1045 PRINTS Kinesin heavy chain signature 579 596 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 PRINTS Kinesin heavy chain signature 610 628 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 PRINTS Kinesin heavy chain signature 659 680 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 PRINTS Kinesin heavy chain signature 457 478 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g06587 1045 ProSitePatterns Kinesin motor domain signature. 609 620 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06587 Seca-Chr4 134235453 134240744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06587 358 736 Calmodulin-binding Proteins AT5G65930 42.377 5.18e-80 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06587 K10406 - gmx:100817247 1726.06