Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06586 ATGGATGAACCCACATTGTTGTTCCCAGACTCAGACCTTGACCTCAGCTTCACCAGCACCACCACTGACCGCACCTTAACCTCCTCCAGCGCCCGCACCAGTTTAGCCCGAACCAGCAGTCTCACCCTCAGCTTCAACGACCGACTCTCAACCGCTACTGCCGCCGCAGCCGCCGCTGTCTCCGCCGCGGTTATCCGTCGTCCTCATCGTAGCTCCGACCCTCACTGGTCCGCCATCAAGGCCGCCACCACACTCTCCTCCGACGGCCGCCTCCACCTCCGTCACTTGAAGCTCCTCCGCCACCTTGGATCCGGAAACCTCGGCCGTGTCTTCCTCTGCCGCCTCCGCGACTACGACGGCGCAAGCTTCGCCCTCAAGGTTGTCGACAAGGACCTCCTCACGCCCAAGAAGCTCTCCCACGCTGAAACCGAGGCGGAGATCCTCCACGCACTCGATCACCCTTTCCTCCCAACGCTCTACGCGCGCATCGATGTCTCCCACTACACGTGCCTCCTCATCGACTATTGCCCCGGCGGCGACCTCCATTCCCTCCTCCGCAAGCAGCCAGGCAACCGTTTTCCCCTCTCGGCGGTGCGATTCTTCGCCGCCGAGATACTCGTCGCGCTTGAGTATCTCCACGCGCTCGGAATCGTGTACCGAGACCTGAAACCGGAGAACGTTCTGTTACGCGAGGATGGCCACGTCATGCTCTCTGATTTTGACCTGTGCTTCAAGGCTGACGTGGCGCCAATGTTCGAGTGCCGTACCCAGAAACCCCACGTGGGGTCCACAAGCGGTTGTTACGGTTATAACCGATCGGGATCTCATGAGCGGGTGGTTGCGGAGTTTGTTGCGGAGCCCACGGCGGCGTTTTCGAGGTCGTGTGTTGGGACGCATGAATACTTGGCGCCAGAGCTTGTTTTGGGTAACGGTCACGGCAATGGTGTGGATTGGTGGGCTTTCGGGGTGTTCGTTTATGAGTTGCTATACGGGACGACGCCGTTTAAAGGGTGTAGCAAGGAGAGCACCCTGCGCAATATAGCGTCGAGCAAGGATGTGAGCTTCCACGTGGCGGAGAAGGAGGAGGCAGGGATGGAAGAAGCTAGGGATTTGATAAAAAAGCTTCTAGTGAAGGACCCTAGGAGGAGACTTGGGTGCACTAGGGGTGCCACAGATGTTAAACGGCACCCGTTTTTTGATGGGATCAAGTGGCCCTTGATTCGGACCTATAGGCCACCGGAGGTGAGGGGGCTATTGAGGAGGAATAGGTCGAATGTGAGTTATGTGAATAGTAAGAAAAAGAGGTGTTGGTGGAAGAGAATTGGGAATGTCTTGAGGAACAAAGGAGCTAAATATAATTTACTTTCCAACTATAGTAATAGTAATTATTATCATTATGTTGATAATAGTAAGGTTAGGTAA 1422 0.5577 MDEPTLLFPDSDLDLSFTSTTTDRTLTSSSARTSLARTSSLTLSFNDRLSTATAAAAAAVSAAVIRRPHRSSDPHWSAIKAATTLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGASFALKVVDKDLLTPKKLSHAETEAEILHALDHPFLPTLYARIDVSHYTCLLIDYCPGGDLHSLLRKQPGNRFPLSAVRFFAAEILVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKADVAPMFECRTQKPHVGSTSGCYGYNRSGSHERVVAEFVAEPTAAFSRSCVGTHEYLAPELVLGNGHGNGVDWWAFGVFVYELLYGTTPFKGCSKESTLRNIASSKDVSFHVAEKEEAGMEEARDLIKKLLVKDPRRRLGCTRGATDVKRHPFFDGIKWPLIRTYRPPEVRGLLRRNRSNVSYVNSKKKRCWWKRIGNVLRNKGAKYNLLSNYSNSNYYHYVDNSKVR. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06586 473 Gene3D Transferase(Phosphotransferase) domain 1 293 414 - -
Seca4g06586 473 Pfam Protein kinase domain 98 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06586 473 FunFam Serine/threonine-protein kinase WAG2 180 246 - -
Seca4g06586 473 PANTHER FLIPPASE KINASE 1-RELATED 33 420 - -
Seca4g06586 473 Coils Coil 358 378 - -
Seca4g06586 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Seca4g06586 473 Gene3D Phosphorylase Kinase; domain 1 95 179 - -
Seca4g06586 473 CDD STKc_phototropin_like 103 415 - -
Seca4g06586 473 ProSiteProfiles Protein kinase domain profile. 96 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06586 473 SUPERFAMILY Protein kinase-like (PK-like) 74 423 IPR011009 -
Seca4g06586 473 FunFam Serine/threonine-protein kinase WAG2 95 179 - -
Seca4g06586 473 Gene3D Transferase(Phosphotransferase) domain 1 180 249 - -
Seca4g06586 473 SMART serkin_6 96 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06586 473 FunFam Serine/threonine-protein kinase OXI1 290 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06586 Seca-Chr4 134226908 134228329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06586 1 470 AGC Kinase Gene Family AT3G14370 65.503 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g06586 Pkinase 1.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06586 - - lja:Lj0g3v0200189.1 722.235