Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06584 ATGGCAAGACCTCAGTTTCAAAAGGTGGAATATTTGAATTTGGTTTCTTCAGCCCAGGGCATATTAACAATGAACAGCACAGGCGACCTTATGCTCAACCAAAACGACTCTGTTGTTTGGCGTACAGACTTAGGAAAACAAGTACAAAATCTGGTGGCAGAGCTCTTGGACAGTGAAGGGTTCAGTCCAAAATCACTGCAAGCATGGAACTCATTAGATTGGAGTGGAGGATGTCTCCGCATTAAACCATTAACCTGCAACGACGAAAACATGGATGGGTTTATCAAATATTCAAAACTCAAAGTACCAGATACTACACACACTTCACTGGATGAGAAAATTCATTTACCGGAATGCAGAACCATGTGCTTGAGTAATTGCTCTTGTATGGCTTATGCAAATTCAGACATAATTAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGACATAAGACAGTTTGAAGATGGTGGGAAAGATCTGTATATCCGGATGTCCATTTCAGAGTTAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAACCTTGTAAAGCTTCTTGGCTGCTATATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGATTTTGGAATGACCAGATCTTTTGGAGGAGACCAAATTGAAGGAAACACAAATAGAATAGTTGGAACTTACTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAACAGAGCTCTTTGTCATAGAAACCAGACTCTTAACCTTGTTGGTTATCAATATTCAGAGGATAGACCAACCATGACCTCAGTAGTACAAATGCTAGGTAGTGAAAAGGAACTAGTTGACCCCAAAGAGCCTGGGTTTTTCCCAAGGAATGTTTCTGATGGAGGAAATTCAAGCTCATTTCAAAATGAAATGAGTACAAATGATGAATTAAACGTTACCTCCTTAAATGGCCGATGA 999 0.3884 MARPQFQKVEYLNLVSSAQGILTMNSTGDLMLNQNDSVVWRTDLGKQVQNLVAELLDSEGFSPKSLQAWNSLDWSGGCLRIKPLTCNDENMDGFIKYSKLKVPDTTHTSLDEKIHLPECRTMCLSNCSCMAYANSDIISGAGSGCVMWFGDLIDIRQFEDGGKDLYIRMSISELEVKLIAKLQHRNLVKLLGCYIRGEEKLLVYEFMANGSLDSFIFDFGMTRSFGGDQIEGNTNRIVGTYFGILLLEIICGNKNRALCHRNQTLNLVGYQYSEDRPTMTSVVQMLGSEKELVDPKEPGFFPRNVSDGGNSSSFQNEMSTNDELNVTSLNGR. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06584 332 Pfam PAN-like domain 86 155 IPR003609 -
Seca4g06584 332 SUPERFAMILY alpha-D-mannose-specific plant lectins 14 77 IPR036426 -
Seca4g06584 332 CDD PAN_AP_plant 83 168 - -
Seca4g06584 332 SMART ntp_6 89 169 IPR003609 -
Seca4g06584 332 MobiDBLite consensus disorder prediction 305 332 - -
Seca4g06584 332 Gene3D Hepatocyte Growth Factor 85 163 - -
Seca4g06584 332 ProSiteProfiles PAN/Apple domain profile. 86 170 IPR003609 -
Seca4g06584 332 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 175 263 - -
Seca4g06584 332 Pfam Protein tyrosine and serine/threonine kinase 175 216 IPR001245 GO:0004672|GO:0006468
Seca4g06584 332 SUPERFAMILY Protein kinase-like (PK-like) 173 295 IPR011009 -
Seca4g06584 332 Gene3D Phosphorylase Kinase; domain 1 164 208 - -
Seca4g06584 332 MobiDBLite consensus disorder prediction 294 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06584 Seca-Chr4 134138876 134141600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06584 175 304 Receptor kinase-like Gene Family AT3G45860 30.924 9.48e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06584 PAN_2 5.1e-21 CL0168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06584 - - pvu:PHAVU_005G088800g 173.326