Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06582 ATGGCTTTAGAGTTGAGTTTCCACTCCCAAAATGGGTTTTACATGATGATGATGATGCTATTGTTTTGCTTTGGCATCATCCTTGTAAGTTCCACCAATGAAGAGGGTTCAAGCCTTTTGAAGTTCAAAAGTTCCCTTTTAGATCCAAATAACAATCTTCTTAACTGGAATCCTTCTGATTTGTCTCCTTGCAATTGGACTGGTGTGTATTGTAAAGGTTCAGTTGTAACTTCTGTAAAACTTTACCACCTTAATCTCTCTGGTACTTTGTCACCTTCCATCTGTAACCTTCCAAGGCTACTTGAGTTGAACCTGTCAAAAAATTTCATCTCTGGACCCATTCCTCAAGGTTTTGTTAACTGTGGTAGATTAGAGATTTTAGACCTTTGTACAAATAGGCTTCATGGACAACTTCTGACCCCTATTTGGAAACTCACAACACTTAGAAAGCTTTACCTTTGTGAAAATTATATGTATGGTGAAGTGCCAGAAGAGGTTGGGGATTTAGTATCACTTGAAGAGCTAGTCATTTATAGCAATAACTTAACTGGAAGAATTCCCCCATCAATCAGTAAGTTGAAGCAGCTTAGAGTTATCAGGGCAGGTCTAAATGGCTTCTCAGGGCCAATACCTGTAGAAATTAGTGAGTGTGAGAGCTTGGAGGTATTGGGTTTGGCACAGAATCAGTTAGTAGGTTCTATTCCAAAGGAGCTTCAAAAGCTTCAGAACCTTACCAATTTGATTCTATGGCAAAACTCTTTATCTGGGGAGATTCCTCCTGAGATTGGAAATATCAGTAGCTTGGAATTGCTTGCTTTGCATCAAAATTCATTTATTGGTGCTGTCCCCAAGGATCTTGGTAAGCTATCCAGGTTGAAGAGGTTGTACATGTACACCAACCAGTTGAATGGAACAATTCCACCAGAGCTTGGGAACTGTACAAATGCTGTTGAGATAGATCTATCTGAAAACCGTTTGAGTGGCTTCATTCCCAAAGAGTTGGGTAAGATCTCTAATCTTAGCTTGGTCCATCTGTTTGAAAACAATCTGGAGGGTCATATTCCAAGGGAGCTTGGGCAGTTGATGCAGCTAAGAAATTTAGACCTGTCACTGAACAACTTAACAGGTACAATTCCACTTGAGTTTCAAAATCTTACATACATGGAGGATTTACAGCTATTTGACAATCAACTTGAGGGTGTTATTCCTCCTCATCTTGGAGCTGTTAGAAACCTTACTATTCTTGATATATCTGCAAACAATCTTGTTGGTATGATACCTGTCCATCTTTGTGAATATCAGAAGCTGCAATTCCTGAGCCTTGGGTCAAATAGGTTGTTTGGAAATATTCCTTATAGCCTGAAAACATGCAAGTCTCTTGTGCAGCTAATGCTGGGGGACAACCAGTTGACAGGAAGTCTACCTGTTGAACTGTATGAACTTCACAATCTTACTGCACTTGAACTTTATCAGAATAGATTCTGTGGGATAATAAACCCAGGGATAGGTCAATTGAGGAATTTAGAGAGGCTTCTCTTGGCAGATAATTATTTTGAGGGGTACCTTCCTTCTGAGATTGGAAATTTAGCACAACTTGTCACATTCAATGTTTCATCTAACCGTTTCAGTGGAAGTATACCTCATGAGTTGGGAAACTGTGTAAGACTGCAGAGGCTTGATCTCAGCAGGAACAAATTCACTGGCATGCTTCCAAATAAAATTGGCAATCTGGTGAATTTGGAGCTGTTGAAAGTTTCTGATAATATGCTCTCTGGAGAAATACCAGGTACTTTGGGTGATCTTATTCGTCTCACAGACCTTGAGTTAGGTGGCAACCAATTCTCAGGAAGCATATCTTTTCATTTTGGAAGACTTGCTGCTCTTCAGATTGCCCTTAACTTAAGTCACAACAAACTTTCTGGCACAATTCCTGATAGCTTGGGGAATTTGCAAATGCTGGAATCCCTTTACTTAAATGACAATCAACTTGTTGGTGAAATTCCTGCATTAATTGGAGACCTTCCTAGTCTTTTAGTATGCAATGTATCTAACAACAAGCTGGAAGGAATTGTTCCAGACACCACTACATTTAGAAAGATGGATTCCACAAATTTTGTTGGGAACAATGGTTTGTGCCGTGTAGGTACCTATCACTGTCATCCATCAGTGGCTTCATCTCATCATGCAAAACCAAGCTGGATCAGAGATGGCTCATCAAGGGAAAAGATAGTGACCATTGTTTCTGGGGTGGTTGGACTAGTTTCTCTTATTTTCATAGTCTGCATATGTTGGACAATGAGGCGCCGAAGCCCTTCTTTTGTTACACTTGAAGGGCAAACAAAGCCTCATGTCTTGGATAACTATTACTTTCCAAAAGAAGGCTTTAGATATCAGGATCTCTTGGAAGCAACTGGCAATTTTTCTGAAGCTGCAGTTATAGGAAGAGGAGCTTGTGGCACTGTCTATAAGGCTGTTATGAATGATGGTGAAGTGATTGCTGTCAAGAAGCTGAATTCACGTGGAGATGGAGCAAATGTTGACAGAAGCTTCCTTGCAGAGATTTCAACACTTGGAAAGATAAGGCACAGGAACATTGTGAAGCTGCATGGATTTTGTTATCATGAGGATTCTAATCTTCTATTGTATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCAAGTGCAAGCACATGTGCACTGGATTGGAGTTGTCGATATAACATTGCTCTAGGAGCAGCTGAAGGCTTATGCTATCTTCATTATGATTGTAAACCTCAAATCATCCATCGTGATATTAAGTCAAACAACATTTTACTTGATCAAGTGTTTCAGGCTCATGTTGGAGACTTTGGCTTGGCAAAGTTGATTGACTTTTCCTACTCAAAATCCATGTCTGCTGTGGCAGGTTCATATGGCTACATTGCCCCAGAATATGCTTATACCATGAAGGTAACTGAGAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACTGGGAGGTCACCTGTTCAACCATTGGAACAGGGTGGTGATTTAGTAAGTTGGGTGAGAAGAGCAATTCAAGCAGCTGTACCAACATCTGAATTATTTGATAAGCGATTGAATCTGAGTGAACAAAGAACAGTTGAAGAGATGTCTCTTATTCTCAAAATTGCTTTGTTTTGCACCAGCACATCTCCTCTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATACAAGGGAATATGTCAGCCATTCACCAACCACTCCTACATCTGAATCTCCACTGGATGAAGATGAAGGTTCTTCTTCTAAAGGTTACAAAGCTGAAAAGTTCATAATTATTGTTATTTTTTTGAGTAATTGA 3378 0.3979 MALELSFHSQNGFYMMMMMLLFCFGIILVSSTNEEGSSLLKFKSSLLDPNNNLLNWNPSDLSPCNWTGVYCKGSVVTSVKLYHLNLSGTLSPSICNLPRLLELNLSKNFISGPIPQGFVNCGRLEILDLCTNRLHGQLLTPIWKLTTLRKLYLCENYMYGEVPEEVGDLVSLEELVIYSNNLTGRIPPSISKLKQLRVIRAGLNGFSGPIPVEISECESLEVLGLAQNQLVGSIPKELQKLQNLTNLILWQNSLSGEIPPEIGNISSLELLALHQNSFIGAVPKDLGKLSRLKRLYMYTNQLNGTIPPELGNCTNAVEIDLSENRLSGFIPKELGKISNLSLVHLFENNLEGHIPRELGQLMQLRNLDLSLNNLTGTIPLEFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPVHLCEYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFCGIINPGIGQLRNLERLLLADNYFEGYLPSEIGNLAQLVTFNVSSNRFSGSIPHELGNCVRLQRLDLSRNKFTGMLPNKIGNLVNLELLKVSDNMLSGEIPGTLGDLIRLTDLELGGNQFSGSISFHFGRLAALQIALNLSHNKLSGTIPDSLGNLQMLESLYLNDNQLVGEIPALIGDLPSLLVCNVSNNKLEGIVPDTTTFRKMDSTNFVGNNGLCRVGTYHCHPSVASSHHAKPSWIRDGSSREKIVTIVSGVVGLVSLIFIVCICWTMRRRSPSFVTLEGQTKPHVLDNYYFPKEGFRYQDLLEATGNFSEAAVIGRGACGTVYKAVMNDGEVIAVKKLNSRGDGANVDRSFLAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYEYMENGSLGEQLHSSASTCALDWSCRYNIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVSWVRRAIQAAVPTSELFDKRLNLSEQRTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDTREYVSHSPTTPTSESPLDEDEGSSSKGYKAEKFIIIVIFLSN. 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06582 1125 SUPERFAMILY L domain-like 34 302 - -
Seca4g06582 1125 SMART LRR_typ_2 289 313 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 505 528 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 409 433 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 169 193 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 529 553 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 97 121 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 650 674 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 577 601 IPR003591 -
Seca4g06582 1125 SMART LRR_typ_2 241 265 IPR003591 -
Seca4g06582 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Seca4g06582 1125 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Seca4g06582 1125 MobiDBLite consensus disorder prediction 1088 1108 - -
Seca4g06582 1125 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 184 282 - -
Seca4g06582 1125 SUPERFAMILY Protein kinase-like (PK-like) 784 1080 IPR011009 -
Seca4g06582 1125 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 32 183 - -
Seca4g06582 1125 ProSiteProfiles Leucine-rich repeat profile. 363 384 IPR001611 GO:0005515
Seca4g06582 1125 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 773 884 - -
Seca4g06582 1125 SUPERFAMILY RNI-like 368 691 - -
Seca4g06582 1125 SMART serkin_6 807 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06582 1125 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 283 385 - -
Seca4g06582 1125 Gene3D Ribonuclease Inhibitor 432 723 IPR032675 -
Seca4g06582 1125 Gene3D Ribonuclease Inhibitor 236 330 IPR032675 -
Seca4g06582 1125 Gene3D Transferase(Phosphotransferase) domain 1 885 1097 - -
Seca4g06582 1125 Gene3D Ribonuclease Inhibitor 141 235 IPR032675 -
Seca4g06582 1125 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca4g06582 1125 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Seca4g06582 1125 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515
Seca4g06582 1125 Gene3D Phosphorylase Kinase; domain 1 776 884 - -
Seca4g06582 1125 Pfam Protein kinase domain 809 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06582 1125 PANTHER UNNAMED PRODUCT 348 1011 - -
Seca4g06582 1125 ProSiteProfiles Protein kinase domain profile. 807 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06582 1125 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 409 723 - -
Seca4g06582 1125 Gene3D Ribonuclease Inhibitor 331 431 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06582 Seca-Chr4 134091981 134097042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06582 57 1084 Receptor kinase-like Gene Family AT1G73080 38.197 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g06582 Pkinase 7.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06582 - - gmx:100818311 1909.03