Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g06582 | ATGGCTTTAGAGTTGAGTTTCCACTCCCAAAATGGGTTTTACATGATGATGATGATGCTATTGTTTTGCTTTGGCATCATCCTTGTAAGTTCCACCAATGAAGAGGGTTCAAGCCTTTTGAAGTTCAAAAGTTCCCTTTTAGATCCAAATAACAATCTTCTTAACTGGAATCCTTCTGATTTGTCTCCTTGCAATTGGACTGGTGTGTATTGTAAAGGTTCAGTTGTAACTTCTGTAAAACTTTACCACCTTAATCTCTCTGGTACTTTGTCACCTTCCATCTGTAACCTTCCAAGGCTACTTGAGTTGAACCTGTCAAAAAATTTCATCTCTGGACCCATTCCTCAAGGTTTTGTTAACTGTGGTAGATTAGAGATTTTAGACCTTTGTACAAATAGGCTTCATGGACAACTTCTGACCCCTATTTGGAAACTCACAACACTTAGAAAGCTTTACCTTTGTGAAAATTATATGTATGGTGAAGTGCCAGAAGAGGTTGGGGATTTAGTATCACTTGAAGAGCTAGTCATTTATAGCAATAACTTAACTGGAAGAATTCCCCCATCAATCAGTAAGTTGAAGCAGCTTAGAGTTATCAGGGCAGGTCTAAATGGCTTCTCAGGGCCAATACCTGTAGAAATTAGTGAGTGTGAGAGCTTGGAGGTATTGGGTTTGGCACAGAATCAGTTAGTAGGTTCTATTCCAAAGGAGCTTCAAAAGCTTCAGAACCTTACCAATTTGATTCTATGGCAAAACTCTTTATCTGGGGAGATTCCTCCTGAGATTGGAAATATCAGTAGCTTGGAATTGCTTGCTTTGCATCAAAATTCATTTATTGGTGCTGTCCCCAAGGATCTTGGTAAGCTATCCAGGTTGAAGAGGTTGTACATGTACACCAACCAGTTGAATGGAACAATTCCACCAGAGCTTGGGAACTGTACAAATGCTGTTGAGATAGATCTATCTGAAAACCGTTTGAGTGGCTTCATTCCCAAAGAGTTGGGTAAGATCTCTAATCTTAGCTTGGTCCATCTGTTTGAAAACAATCTGGAGGGTCATATTCCAAGGGAGCTTGGGCAGTTGATGCAGCTAAGAAATTTAGACCTGTCACTGAACAACTTAACAGGTACAATTCCACTTGAGTTTCAAAATCTTACATACATGGAGGATTTACAGCTATTTGACAATCAACTTGAGGGTGTTATTCCTCCTCATCTTGGAGCTGTTAGAAACCTTACTATTCTTGATATATCTGCAAACAATCTTGTTGGTATGATACCTGTCCATCTTTGTGAATATCAGAAGCTGCAATTCCTGAGCCTTGGGTCAAATAGGTTGTTTGGAAATATTCCTTATAGCCTGAAAACATGCAAGTCTCTTGTGCAGCTAATGCTGGGGGACAACCAGTTGACAGGAAGTCTACCTGTTGAACTGTATGAACTTCACAATCTTACTGCACTTGAACTTTATCAGAATAGATTCTGTGGGATAATAAACCCAGGGATAGGTCAATTGAGGAATTTAGAGAGGCTTCTCTTGGCAGATAATTATTTTGAGGGGTACCTTCCTTCTGAGATTGGAAATTTAGCACAACTTGTCACATTCAATGTTTCATCTAACCGTTTCAGTGGAAGTATACCTCATGAGTTGGGAAACTGTGTAAGACTGCAGAGGCTTGATCTCAGCAGGAACAAATTCACTGGCATGCTTCCAAATAAAATTGGCAATCTGGTGAATTTGGAGCTGTTGAAAGTTTCTGATAATATGCTCTCTGGAGAAATACCAGGTACTTTGGGTGATCTTATTCGTCTCACAGACCTTGAGTTAGGTGGCAACCAATTCTCAGGAAGCATATCTTTTCATTTTGGAAGACTTGCTGCTCTTCAGATTGCCCTTAACTTAAGTCACAACAAACTTTCTGGCACAATTCCTGATAGCTTGGGGAATTTGCAAATGCTGGAATCCCTTTACTTAAATGACAATCAACTTGTTGGTGAAATTCCTGCATTAATTGGAGACCTTCCTAGTCTTTTAGTATGCAATGTATCTAACAACAAGCTGGAAGGAATTGTTCCAGACACCACTACATTTAGAAAGATGGATTCCACAAATTTTGTTGGGAACAATGGTTTGTGCCGTGTAGGTACCTATCACTGTCATCCATCAGTGGCTTCATCTCATCATGCAAAACCAAGCTGGATCAGAGATGGCTCATCAAGGGAAAAGATAGTGACCATTGTTTCTGGGGTGGTTGGACTAGTTTCTCTTATTTTCATAGTCTGCATATGTTGGACAATGAGGCGCCGAAGCCCTTCTTTTGTTACACTTGAAGGGCAAACAAAGCCTCATGTCTTGGATAACTATTACTTTCCAAAAGAAGGCTTTAGATATCAGGATCTCTTGGAAGCAACTGGCAATTTTTCTGAAGCTGCAGTTATAGGAAGAGGAGCTTGTGGCACTGTCTATAAGGCTGTTATGAATGATGGTGAAGTGATTGCTGTCAAGAAGCTGAATTCACGTGGAGATGGAGCAAATGTTGACAGAAGCTTCCTTGCAGAGATTTCAACACTTGGAAAGATAAGGCACAGGAACATTGTGAAGCTGCATGGATTTTGTTATCATGAGGATTCTAATCTTCTATTGTATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCAAGTGCAAGCACATGTGCACTGGATTGGAGTTGTCGATATAACATTGCTCTAGGAGCAGCTGAAGGCTTATGCTATCTTCATTATGATTGTAAACCTCAAATCATCCATCGTGATATTAAGTCAAACAACATTTTACTTGATCAAGTGTTTCAGGCTCATGTTGGAGACTTTGGCTTGGCAAAGTTGATTGACTTTTCCTACTCAAAATCCATGTCTGCTGTGGCAGGTTCATATGGCTACATTGCCCCAGAATATGCTTATACCATGAAGGTAACTGAGAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACTGGGAGGTCACCTGTTCAACCATTGGAACAGGGTGGTGATTTAGTAAGTTGGGTGAGAAGAGCAATTCAAGCAGCTGTACCAACATCTGAATTATTTGATAAGCGATTGAATCTGAGTGAACAAAGAACAGTTGAAGAGATGTCTCTTATTCTCAAAATTGCTTTGTTTTGCACCAGCACATCTCCTCTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATACAAGGGAATATGTCAGCCATTCACCAACCACTCCTACATCTGAATCTCCACTGGATGAAGATGAAGGTTCTTCTTCTAAAGGTTACAAAGCTGAAAAGTTCATAATTATTGTTATTTTTTTGAGTAATTGA | 3378 | 0.3979 | MALELSFHSQNGFYMMMMMLLFCFGIILVSSTNEEGSSLLKFKSSLLDPNNNLLNWNPSDLSPCNWTGVYCKGSVVTSVKLYHLNLSGTLSPSICNLPRLLELNLSKNFISGPIPQGFVNCGRLEILDLCTNRLHGQLLTPIWKLTTLRKLYLCENYMYGEVPEEVGDLVSLEELVIYSNNLTGRIPPSISKLKQLRVIRAGLNGFSGPIPVEISECESLEVLGLAQNQLVGSIPKELQKLQNLTNLILWQNSLSGEIPPEIGNISSLELLALHQNSFIGAVPKDLGKLSRLKRLYMYTNQLNGTIPPELGNCTNAVEIDLSENRLSGFIPKELGKISNLSLVHLFENNLEGHIPRELGQLMQLRNLDLSLNNLTGTIPLEFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPVHLCEYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFCGIINPGIGQLRNLERLLLADNYFEGYLPSEIGNLAQLVTFNVSSNRFSGSIPHELGNCVRLQRLDLSRNKFTGMLPNKIGNLVNLELLKVSDNMLSGEIPGTLGDLIRLTDLELGGNQFSGSISFHFGRLAALQIALNLSHNKLSGTIPDSLGNLQMLESLYLNDNQLVGEIPALIGDLPSLLVCNVSNNKLEGIVPDTTTFRKMDSTNFVGNNGLCRVGTYHCHPSVASSHHAKPSWIRDGSSREKIVTIVSGVVGLVSLIFIVCICWTMRRRSPSFVTLEGQTKPHVLDNYYFPKEGFRYQDLLEATGNFSEAAVIGRGACGTVYKAVMNDGEVIAVKKLNSRGDGANVDRSFLAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYEYMENGSLGEQLHSSASTCALDWSCRYNIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVSWVRRAIQAAVPTSELFDKRLNLSEQRTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDTREYVSHSPTTPTSESPLDEDEGSSSKGYKAEKFIIIVIFLSN. | 1126 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g06582 | 1125 | SUPERFAMILY | L domain-like | 34 | 302 | - | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 289 | 313 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 505 | 528 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 409 | 433 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 169 | 193 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 529 | 553 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 97 | 121 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 650 | 674 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 577 | 601 | IPR003591 | - | |
Seca4g06582 | 1125 | SMART | LRR_typ_2 | 241 | 265 | IPR003591 | - | |
Seca4g06582 | 1125 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 930 | 942 | IPR008271 | GO:0004672|GO:0006468 | |
Seca4g06582 | 1125 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 885 | 1097 | - | - | |
Seca4g06582 | 1125 | MobiDBLite | consensus disorder prediction | 1088 | 1108 | - | - | |
Seca4g06582 | 1125 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B | 184 | 282 | - | - | |
Seca4g06582 | 1125 | SUPERFAMILY | Protein kinase-like (PK-like) | 784 | 1080 | IPR011009 | - | |
Seca4g06582 | 1125 | FunFam | Probable leucine-rich repeat receptor-like protein kinase At2g33170 | 32 | 183 | - | - | |
Seca4g06582 | 1125 | ProSiteProfiles | Leucine-rich repeat profile. | 363 | 384 | IPR001611 | GO:0005515 | |
Seca4g06582 | 1125 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 773 | 884 | - | - | |
Seca4g06582 | 1125 | SUPERFAMILY | RNI-like | 368 | 691 | - | - | |
Seca4g06582 | 1125 | SMART | serkin_6 | 807 | 1087 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g06582 | 1125 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B | 283 | 385 | - | - | |
Seca4g06582 | 1125 | Gene3D | Ribonuclease Inhibitor | 432 | 723 | IPR032675 | - | |
Seca4g06582 | 1125 | Gene3D | Ribonuclease Inhibitor | 236 | 330 | IPR032675 | - | |
Seca4g06582 | 1125 | Gene3D | Transferase(Phosphotransferase) domain 1 | 885 | 1097 | - | - | |
Seca4g06582 | 1125 | Gene3D | Ribonuclease Inhibitor | 141 | 235 | IPR032675 | - | |
Seca4g06582 | 1125 | Pfam | Leucine rich repeat N-terminal domain | 33 | 71 | IPR013210 | - | |
Seca4g06582 | 1125 | Gene3D | Ribonuclease Inhibitor | 34 | 140 | IPR032675 | - | |
Seca4g06582 | 1125 | Pfam | Leucine rich repeat | 555 | 614 | IPR001611 | GO:0005515 | |
Seca4g06582 | 1125 | Gene3D | Phosphorylase Kinase; domain 1 | 776 | 884 | - | - | |
Seca4g06582 | 1125 | Pfam | Protein kinase domain | 809 | 1077 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g06582 | 1125 | PANTHER | UNNAMED PRODUCT | 348 | 1011 | - | - | |
Seca4g06582 | 1125 | ProSiteProfiles | Protein kinase domain profile. | 807 | 1087 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g06582 | 1125 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 409 | 723 | - | - | |
Seca4g06582 | 1125 | Gene3D | Ribonuclease Inhibitor | 331 | 431 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g06582 | Seca-Chr4 | 134091981 | 134097042 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g06582 | 57 | 1084 | Receptor kinase-like Gene Family | AT1G73080 | 38.197 | 0.0 | 638 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca4g06582 | Pkinase | 7.3e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g06582 | - | - | gmx:100818311 | 1909.03 |