Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06580 ATGGAAGAAGAAGTAATTCTTCTGGGGTTCTGGGCCAGCGCTTATGTTATGAGAGTGAAGATTGCCTTGTTAGAGAAAGGAGTTCAATTCCACTACAAGGAAGAACAGGATATATTTGAGAACCAAAACAAGAGCGAGTTACTACTGAAATCAAATCCCATTCACAAAAAGGTTCCTGTCCTAATTCACAATGGTAGGCCCATATGCGAGTCCCTCATCATCCTTGAATACATTGATGAGGTTTGGAAGCAACAAAAACAGCTTTTCTCTGATGATCCTTGCTACCGAGCCAAAGCCAGGTTTTGGATTGATTTCTTTGACAAAAAGATAACTGATTGTGGCAAGAGGATGTGGGCTAGCAAGGGAGAAGACCAGCAGAATGCAAAGAAAGAGTTTGTGGAGTGCTTGAAACTATTGGAAAATGAACTCAGGGACAAGCCTTATTTTTCTGGTGATTATTTTGGCCTTTTGGATATAGCCTTGATACCAATCACATGCAGGTTTTACACATACGAGAAATTATGCAAATTTAGTTTGGAGGAGGAATGCCCAAGGTACATGGAATGGATCAGAAGGTGTAATAAGAGAGAGAGTGTTTCCAAGACTCTTCCTGACCCAAATAAAGTCTATGACTTTGTGTTGGAGAGAAAGAAAAGGTTTAAAATTGAGTGA 672 0.4003 MEEEVILLGFWASAYVMRVKIALLEKGVQFHYKEEQDIFENQNKSELLLKSNPIHKKVPVLIHNGRPICESLIILEYIDEVWKQQKQLFSDDPCYRAKARFWIDFFDKKITDCGKRMWASKGEDQQNAKKEFVECLKLLENELRDKPYFSGDYFGLLDIALIPITCRFYTYEKLCKFSLEEECPRYMEWIRRCNKRESVSKTLPDPNKVYDFVLERKKRFKIE. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06580 223 Gene3D Glutaredoxin 1 90 - -
Seca4g06580 223 Pfam Glutathione S-transferase, N-terminal domain 4 80 IPR004045 -
Seca4g06580 223 Pfam Glutathione S-transferase, C-terminal domain 127 192 - -
Seca4g06580 223 SUPERFAMILY Thioredoxin-like 5 110 IPR036249 -
Seca4g06580 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 86 IPR004045 -
Seca4g06580 223 Gene3D - 92 223 - -
Seca4g06580 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 220 IPR010987 -
Seca4g06580 223 FunFam Glutathione S-transferase U20 92 223 - -
Seca4g06580 223 SFLD Glutathione Transferase (cytosolic) 2 222 IPR040079 -
Seca4g06580 223 SFLD Main.3: Omega- and Tau-like 2 222 IPR045073 -
Seca4g06580 223 CDD GST_N_Tau 5 82 - -
Seca4g06580 223 SUPERFAMILY GST C-terminal domain-like 80 220 IPR036282 -
Seca4g06580 223 CDD GST_C_Tau 96 216 IPR045074 GO:0004364|GO:0006749
Seca4g06580 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 211 IPR045073 -
Seca4g06580 223 FunFam Tau class glutathione S-transferase 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06580 Seca-Chr4 134082430 134084161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06580 1 220 Glutathione S-transferase Gene Family AT1G78380 55.909 7.64e-89 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06580 K00799 - mnt:21390803 320.087