LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g06579	ATGAAGAATTTCTGCAGAAAGAACAAAGTTCCCAGCTTGACCAGCCTCTCCGTGCTTTTGTTTCTCCTTCAGCTGTTGTTCCCCAGTGAGGTTTACTCATATGATCCTGCAGATAATTTTGCTGTCAACTGTGGCTACTCCGGAAATGTCAACTTTCATAATCGGAACTGGATTGGCGACGTTAACGTTGACCCCAAACTGTTTTCTACCATTGAAGTTCAATCTGGACAACCATCTGTCAAATCCTATCCTCCTAATTCTCCTTCAGTTAGCCAAGTTCCATTCGGAACCGCACGTCTCTTTCACTCCAAATTCACCTACTCCTTTCCTGTCACTAACGGCCCAAAGTTCCTTCGCCTTCACTTTTATCCAACATCCTATCTCAACTTTGATCCCTACAACGCCCTCTTCTCTGTCATAGCAGGCAACCTTACCCTTCTCAAAGACTTCAACGCCTCACTTTGGGTTCACAAAGATGACAAGACAATCACCAAAGAATACTGTGTCAACGTGGAAACAGGTGAGAGGCTAAACGTAACTTTCCTTCCCAGCACCAATCACTCTGATGCTTATGCTTTTATCAACGGGATCGAGGTTGTGTCTATGCCTCCTTTCCTCTATTACACTAACACCAGTGACTTAGATTTTAAAGTTAAGCCTAAGCTGGTGGGTCATGATGGCACACCATTCCAAATTCAACACGACAAAGCTCTGGAGACACTTTACAGAGTCAATGTTGGCGATAATCAGGTTCCAGCGAGTAACGATACTGGCATGTTCCGGAATTGGGACAATGATTATCCACGCTACTTGGAGAAGCAATACCCATTCAGTGTATCAAGTGGCTTTGCAGTTCAAGTCAACTATAGAAATAATGTTATTCCAAATTACACTGCACCAGCCGTTGTATACTTAACTGCCCGAAGTTACGGACGGGATGAGACTGCGGATTATAATGTAACTTGGAATTTTGAAGTGGATTCACAGTTTAATTACATGATCAGGTTACATTTCTGCGAGTTTGACTTGCATATCCAGCGTGAGGGCGATAGAGTTTTCCAGATTTTTATAGCTGAGACTTTGGCTGAGCAATACGCTGATGTGATTTCCTGGAGTGGCGGTAACTTAGTTCCCGTTCATAAGGATTATGCAGTGATTATGAACACACAAGGAAGCTCTAACAGTGAGAAAGCCAATCTTTCCATCAAGCTGCAACGGCTGCCAGAGGGTATGGGAACCAAATACCGTGATGTAACATTGAATGGTATCGAAATTTTCAAAATAAGTGACGAAAATCACAATCTCGCAGGACCCAATCCCGAAGCCATTCTATCTCCACCATCGCAAAATCAATCATCCAAACAATCAAAGACCACCACAGTTATTGTTGCCGTGGTAGTCGCTGTTCCAGGCTTCATACTGGCATCTGTTATTGGCATCATAATTTTTCGGCGATGGAGAAGATCTCATGAAGGGTCCCAGAAGACAAAGACGGAAGGGTCATTTTTGCCATCTCATTTATGCCGCTACTTTACAATTGCGGAGATCAGAGCTGCCACAAACAATTTCGATGATGTTTTCATCATCGGGGTTGGAGGCTTTGGCAACGTGTACAAGGGTTACATTGACGGAACCACCCCCGTTGCGATTAAACGCCTCAAACCAGGTTCTCAACAAGGTGTCAACGAGTTCATGAACGAGATCGAGATGCTCTCTCAACTTCGCCATGTTCATCTGGTGTCCCTCATTGGTTACTGCAACGATGGTGGAGAGATGATCATCGTGTATGACTTCATGGCGCGTGGCACTCTCCGCGAGTATCTCTACCACTCTGATAACCAACCCCTTTCTTGGAAGCAGAGGCTTGCGATCTTATTGGGTGCAGCAAGAGGGCTGCATTATCTTCATGCAGGTGCGACGCACAATATCATTCACCGTGACGTGAAGAGCACGAACATCTTGTTGGATGAGAAATGGGTTGCCAAGGTCTCTGACTTTGGGTTATCGAAGGTGGGACCCACAGGGATGTCCGTCACCCACGTCAGCACTGTAGTGAAAGGCAGCCTTGGGTACTTGGACCCGGAATACTACAAGCGTCAAAGGTTGACTCTCAAGTCTGACGTGTACTCATTCGGTGTGGTGCTTCTTGAGGTGCTGTGTGGAAGGCCACCTTTTGTTCGAACCATGGATAAGAAGAAGGCGAATCTGGTTGATTGGGTTCGGAAGTGTTATGATAAAGGAGAGATTGAACAGACGGTGGATCCATTTATAAAGGATTCTGTTACAGTGGAGTGTTTGAAATGTTACAGCCAGATGGCGATGAGTTGCTTGCATGATGATGGGAATCAACGGCCCTCGATGAGTGATGTGGTTGGGGCATTGCAGTTTGCGTTGCAGTTGGTGGAGGGTGAAGAAGAAGATAACAAGTTTGGTGGGACCCAAGAAGACGGAAACAGTAAGGAAAGACTACTGTTCCCTCAGTTTATTATGAGTGATGAAGGGAGTGATGTGCGCTTCACTAGTACTGATGAATCCGGGACCCAGAGTAGCAAGGTGACCGTAGTCTCAGACAGTACTGAGGAACACCCTTCGGTCTCTGCTATTGTGTTTTCTGAGATTGGGAATCCAAGAGCACGATAG	2640	0.4561	MKNFCRKNKVPSLTSLSVLLFLLQLLFPSEVYSYDPADNFAVNCGYSGNVNFHNRNWIGDVNVDPKLFSTIEVQSGQPSVKSYPPNSPSVSQVPFGTARLFHSKFTYSFPVTNGPKFLRLHFYPTSYLNFDPYNALFSVIAGNLTLLKDFNASLWVHKDDKTITKEYCVNVETGERLNVTFLPSTNHSDAYAFINGIEVVSMPPFLYYTNTSDLDFKVKPKLVGHDGTPFQIQHDKALETLYRVNVGDNQVPASNDTGMFRNWDNDYPRYLEKQYPFSVSSGFAVQVNYRNNVIPNYTAPAVVYLTARSYGRDETADYNVTWNFEVDSQFNYMIRLHFCEFDLHIQREGDRVFQIFIAETLAEQYADVISWSGGNLVPVHKDYAVIMNTQGSSNSEKANLSIKLQRLPEGMGTKYRDVTLNGIEIFKISDENHNLAGPNPEAILSPPSQNQSSKQSKTTTVIVAVVVAVPGFILASVIGIIIFRRWRRSHEGSQKTKTEGSFLPSHLCRYFTIAEIRAATNNFDDVFIIGVGGFGNVYKGYIDGTTPVAIKRLKPGSQQGVNEFMNEIEMLSQLRHVHLVSLIGYCNDGGEMIIVYDFMARGTLREYLYHSDNQPLSWKQRLAILLGAARGLHYLHAGATHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSVTHVSTVVKGSLGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCGRPPFVRTMDKKKANLVDWVRKCYDKGEIEQTVDPFIKDSVTVECLKCYSQMAMSCLHDDGNQRPSMSDVVGALQFALQLVEGEEEDNKFGGTQEDGNSKERLLFPQFIMSDEGSDVRFTSTDESGTQSSKVTVVSDSTEEHPSVSAIVFSEIGNPRAR.	880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g06579	879	FunFam	Receptor-like protein kinase FERONIA	599	816	-	-
	Seca4g06579	879	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	643	655	IPR008271	GO:0004672\|GO:0006468
	Seca4g06579	879	CDD	STKc_IRAK	529	791	-	-
	Seca4g06579	879	FunFam	FERONIA receptor-like kinase	236	429	-	-
	Seca4g06579	879	Pfam	Malectin-like domain	42	428	IPR024788	-
	Seca4g06579	879	ProSitePatterns	Protein kinases ATP-binding region signature.	529	551	IPR017441	GO:0005524
	Seca4g06579	879	FunFam	Receptor-like protein kinase FERONIA	495	598	-	-
	Seca4g06579	879	Pfam	Protein tyrosine and serine/threonine kinase	529	792	IPR001245	GO:0004672\|GO:0006468
	Seca4g06579	879	Gene3D	Phosphorylase Kinase; domain 1	485	598	-	-
	Seca4g06579	879	Gene3D	-	39	202	-	-
	Seca4g06579	879	Gene3D	-	236	429	-	-
	Seca4g06579	879	SUPERFAMILY	Protein kinase-like (PK-like)	497	796	IPR011009	-
	Seca4g06579	879	MobiDBLite	consensus disorder prediction	836	865	-	-
	Seca4g06579	879	PANTHER	OS03G0124300 PROTEIN-RELATED	16	491	IPR046957	GO:0004672
	Seca4g06579	879	MobiDBLite	consensus disorder prediction	836	879	-	-
	Seca4g06579	879	Gene3D	Transferase(Phosphotransferase) domain 1	599	815	-	-
	Seca4g06579	879	FunFam	FERONIA receptor-like kinase	39	203	-	-
	Seca4g06579	879	ProSiteProfiles	Protein kinase domain profile.	523	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g06579	879	SMART	serkin_6	523	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g06579	Seca-Chr4	134028333	134030972	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g06579	34	879	Receptor kinase-like Gene Family	AT3G51550	46.385	0.0	691

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca4g06579		Malectin_like	9.3e-39	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g06579	-		-	mtr:25497555	988.408