Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06576 ATGGCGAATGAGGTGGTTCTGTTGGACACCTTGGTCAGCATATTTGGGATGAGAGTTAGGATTGCATTGGCTGAAAAGGGGGTAATGTATGAGTACAAGGAAGAGAATCTCAGAAACAAGAGCCCATTGCTTCTGCAGATGAACCCTGTTCACAAAAAGATCCCAGTTTTCATCCATAATGGCAAACCCATATGTGAATCTGCAATAATCGTGCAGTACATCGATGAGGTCTGGAAGGACAAAGCTCTAATTATGCCCTCTGACCCATACGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGGTGTATGATACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAAGAGCATGAGGCAGGGAAGAAGGAGCTGATCTCTATCTTTAAGCAACTAGAGGAGACACTTGGTGACAAACCTTTCTATGGGGGTGACACATTTGGGTTTGTTGATCTGTGTCTGATCCCTTTTTATAGCTGGTTTTATACTTTTGAGACCTTTGGAAACTTCAAAATGGAATTTGAGTGTCCTAAATTGATGGCTTGGGTCAAGAGATGCATGCAGAGACAGACTGTGTCCAAAACTCTCCCTGATGAGAAGCAGGTGTATGAGTATGTTTTGCGTCTGCAGAAAGCAATTGGACAGTAA 657 0.4292 MANEVVLLDTLVSIFGMRVRIALAEKGVMYEYKEENLRNKSPLLLQMNPVHKKIPVFIHNGKPICESAIIVQYIDEVWKDKALIMPSDPYERAQARFWVDYIDKKVYDTWRKMWLSKGEEHEAGKKELISIFKQLEETLGDKPFYGGDTFGFVDLCLIPFYSWFYTFETFGNFKMEFECPKLMAWVKRCMQRQTVSKTLPDEKQVYEYVLRLQKAIGQ. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06576 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 10 207 IPR045073 -
Seca4g06576 218 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Seca4g06576 218 Gene3D Glutaredoxin 1 87 - -
Seca4g06576 218 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Seca4g06576 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Seca4g06576 218 Pfam Glutathione S-transferase, N-terminal domain 9 76 IPR004045 -
Seca4g06576 218 CDD GST_N_Tau 5 78 - -
Seca4g06576 218 Pfam Glutathione S-transferase, C-terminal domain 120 192 IPR004046 -
Seca4g06576 218 FunFam Glutathione S-transferase U20 88 218 - -
Seca4g06576 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
Seca4g06576 218 Gene3D - 88 218 - -
Seca4g06576 218 SUPERFAMILY GST C-terminal domain-like 76 214 IPR036282 -
Seca4g06576 218 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Seca4g06576 218 FunFam Tau class glutathione S-transferase 1 87 - -
Seca4g06576 218 SFLD Main (cytGST) 2 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06576 Seca-Chr4 133959870 133965401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06576 1 214 Glutathione S-transferase Gene Family AT1G78380 66.355 1.28e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06576 K00799 - gmx:547950 387.882