LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g06571	ATGGAGTGCAATAAGGATGAGGCCATCAGAGCTAAAGAAATTGCTGAGAAAAAGTTTGTTGCAAAGGATATTTTGGGAGCAAGAAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTAGTCTTGATGGTATTTCTGAAATGTTAACAACAATTAATGTGTATATTTCTGCTACTAATGAAATAAATGGTAAAGTAGTCCTAAACCGGTATGGTATACTTGGTGTGGATCCCCTGGCTGATGATGACACATTGAGGAAACAATATAGAAAGCTGGTTCATATGCTTCACCCTGATAATAACAAGTCCATTGGTGCAGATGGGGCCTTTAAACTAGTTTCAGAGGCATGGAATATACTATCAGATAAGGCTAAAAGGGTAGCATATGATGAGAAGATAAATGCAAGGACTCAAGGGAAAACTATTGAAGAGATTAGCAAGAAACCAAGTCAAATTCAGAAAGATTCTAATGACAAAACAACAGTGAAAGAGATCATTGGAAACGACTACCAAAAAGCAAATGAGGAAGGAGGAAAATCTGTAAGAAACTCAGATGGAAGAATGAATGGATGCGAAGCCATGAATTTATTTGCAGGCACTACCACATATGATGACATGGAGTCCATGTTATCAATAGATGCCCCAAATCCTCATTTCTATTGTTTTGACTTGGATCGAATTGAAGGATCTTTTGGAGAAAATCAAGTATGGGCTGCATTTGATGAAGAAGAAGGGATGCCTCGATATTATGCAGTGATACACAATGTCATTTCTATGAATCCGTTCAAGATGCAGTTCAACTGGCTCCACATGAAGAAGACCAAGGTTGAAAGGACCCCAACTCTGAATTGGGGTGGGTCACGCTTTTCAAGAGCTTGTGGGAATTTCAGAATGGGAAGATATGAAATCACTAACACGTTCAATTTTTTCTCACACAAAGTGAGATATAAAAAGGGTAATGATGGAACTATTTTTATATATCCCAGGAAAGGGGATGTTTGGGCACTCTATAGAAATTGGTCTTCCAAATGGAATAGACTAACACCTGATGATGTGACACAAAATTATGATATGGTTGAAGTACTTGATGTTTTCAATGATTTCATTGTCATTCCTCTGGTCAAAGTGGCTGGTTTTAGGACAATATTTCGTCGTGAGTTGGATTTGAGAGAAATCAGGGTCATTCCAAGGAAAGAAATATTGCGGTTCTCTCATCAGGTTCCTTCAACCATACTTAGTGGTGAAGAAGCTCCAGATGCCCCAAATGGTTGTTGGGAGTTGGACCCAGCAGCTATTTCATCTGAACATCTTGAGGTAATCGAAGTTGTGAAGGATAAAGACATTGTTATGGTCAACAATGAGGATACTATAATTAAAGAAACAACAGATGATAGCATGAAAGAAGCTGATAGTAAGGAAATGAACAATGATATGGGAACACATGTGGAAGAAAAAAAGGAGATATTGAAACTATAG	1473	0.3788	MECNKDEAIRAKEIAEKKFVAKDILGARKFALKAQSLFPSLDGISEMLTTINVYISATNEINGKVVLNRYGILGVDPLADDDTLRKQYRKLVHMLHPDNNKSIGADGAFKLVSEAWNILSDKAKRVAYDEKINARTQGKTIEEISKKPSQIQKDSNDKTTVKEIIGNDYQKANEEGGKSVRNSDGRMNGCEAMNLFAGTTTYDDMESMLSIDAPNPHFYCFDLDRIEGSFGENQVWAAFDEEEGMPRYYAVIHNVISMNPFKMQFNWLHMKKTKVERTPTLNWGGSRFSRACGNFRMGRYEITNTFNFFSHKVRYKKGNDGTIFIYPRKGDVWALYRNWSSKWNRLTPDDVTQNYDMVEVLDVFNDFIVIPLVKVAGFRTIFRRELDLREIRVIPRKEILRFSHQVPSTILSGEEAPDAPNGCWELDPAAISSEHLEVIEVVKDKDIVMVNNEDTIIKETTDDSMKEADSKEMNNDMGTHVEEKKEILKL.	491

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g06571	490	PRINTS	DnaJ domain signature	88	103	IPR001623	-
	Seca4g06571	490	PRINTS	DnaJ domain signature	70	88	IPR001623	-
	Seca4g06571	490	PRINTS	DnaJ domain signature	104	124	IPR001623	-
	Seca4g06571	490	SUPERFAMILY	Chaperone J-domain	67	132	IPR036869	-
	Seca4g06571	490	Pfam	Domain of unknown function (DUF3444)	210	415	IPR024593	-
	Seca4g06571	490	SMART	dnaj_3	67	124	IPR001623	-
	Seca4g06571	490	ProSiteProfiles	dnaJ domain profile.	68	132	IPR001623	-
	Seca4g06571	490	Pfam	DnaJ domain	69	129	IPR001623	-
	Seca4g06571	490	Gene3D	DnaJ domain	67	179	IPR036869	-
	Seca4g06571	490	CDD	DnaJ	70	121	IPR001623	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g06571	Seca-Chr4	133868129	133869601	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g06571	4	133	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	38.060	4.56e-21	92.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g06571	-		-	gmx:102661977	352.058

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