Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06571 ATGGAGTGCAATAAGGATGAGGCCATCAGAGCTAAAGAAATTGCTGAGAAAAAGTTTGTTGCAAAGGATATTTTGGGAGCAAGAAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTAGTCTTGATGGTATTTCTGAAATGTTAACAACAATTAATGTGTATATTTCTGCTACTAATGAAATAAATGGTAAAGTAGTCCTAAACCGGTATGGTATACTTGGTGTGGATCCCCTGGCTGATGATGACACATTGAGGAAACAATATAGAAAGCTGGTTCATATGCTTCACCCTGATAATAACAAGTCCATTGGTGCAGATGGGGCCTTTAAACTAGTTTCAGAGGCATGGAATATACTATCAGATAAGGCTAAAAGGGTAGCATATGATGAGAAGATAAATGCAAGGACTCAAGGGAAAACTATTGAAGAGATTAGCAAGAAACCAAGTCAAATTCAGAAAGATTCTAATGACAAAACAACAGTGAAAGAGATCATTGGAAACGACTACCAAAAAGCAAATGAGGAAGGAGGAAAATCTGTAAGAAACTCAGATGGAAGAATGAATGGATGCGAAGCCATGAATTTATTTGCAGGCACTACCACATATGATGACATGGAGTCCATGTTATCAATAGATGCCCCAAATCCTCATTTCTATTGTTTTGACTTGGATCGAATTGAAGGATCTTTTGGAGAAAATCAAGTATGGGCTGCATTTGATGAAGAAGAAGGGATGCCTCGATATTATGCAGTGATACACAATGTCATTTCTATGAATCCGTTCAAGATGCAGTTCAACTGGCTCCACATGAAGAAGACCAAGGTTGAAAGGACCCCAACTCTGAATTGGGGTGGGTCACGCTTTTCAAGAGCTTGTGGGAATTTCAGAATGGGAAGATATGAAATCACTAACACGTTCAATTTTTTCTCACACAAAGTGAGATATAAAAAGGGTAATGATGGAACTATTTTTATATATCCCAGGAAAGGGGATGTTTGGGCACTCTATAGAAATTGGTCTTCCAAATGGAATAGACTAACACCTGATGATGTGACACAAAATTATGATATGGTTGAAGTACTTGATGTTTTCAATGATTTCATTGTCATTCCTCTGGTCAAAGTGGCTGGTTTTAGGACAATATTTCGTCGTGAGTTGGATTTGAGAGAAATCAGGGTCATTCCAAGGAAAGAAATATTGCGGTTCTCTCATCAGGTTCCTTCAACCATACTTAGTGGTGAAGAAGCTCCAGATGCCCCAAATGGTTGTTGGGAGTTGGACCCAGCAGCTATTTCATCTGAACATCTTGAGGTAATCGAAGTTGTGAAGGATAAAGACATTGTTATGGTCAACAATGAGGATACTATAATTAAAGAAACAACAGATGATAGCATGAAAGAAGCTGATAGTAAGGAAATGAACAATGATATGGGAACACATGTGGAAGAAAAAAAGGAGATATTGAAACTATAG 1473 0.3788 MECNKDEAIRAKEIAEKKFVAKDILGARKFALKAQSLFPSLDGISEMLTTINVYISATNEINGKVVLNRYGILGVDPLADDDTLRKQYRKLVHMLHPDNNKSIGADGAFKLVSEAWNILSDKAKRVAYDEKINARTQGKTIEEISKKPSQIQKDSNDKTTVKEIIGNDYQKANEEGGKSVRNSDGRMNGCEAMNLFAGTTTYDDMESMLSIDAPNPHFYCFDLDRIEGSFGENQVWAAFDEEEGMPRYYAVIHNVISMNPFKMQFNWLHMKKTKVERTPTLNWGGSRFSRACGNFRMGRYEITNTFNFFSHKVRYKKGNDGTIFIYPRKGDVWALYRNWSSKWNRLTPDDVTQNYDMVEVLDVFNDFIVIPLVKVAGFRTIFRRELDLREIRVIPRKEILRFSHQVPSTILSGEEAPDAPNGCWELDPAAISSEHLEVIEVVKDKDIVMVNNEDTIIKETTDDSMKEADSKEMNNDMGTHVEEKKEILKL. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06571 490 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca4g06571 490 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca4g06571 490 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca4g06571 490 SUPERFAMILY Chaperone J-domain 67 132 IPR036869 -
Seca4g06571 490 Pfam Domain of unknown function (DUF3444) 210 415 IPR024593 -
Seca4g06571 490 SMART dnaj_3 67 124 IPR001623 -
Seca4g06571 490 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca4g06571 490 Pfam DnaJ domain 69 129 IPR001623 -
Seca4g06571 490 Gene3D DnaJ domain 67 179 IPR036869 -
Seca4g06571 490 CDD DnaJ 70 121 IPR001623 -
Seca4g06571 490 PANTHER BNAC03G44070D PROTEIN 1 431 - -
Seca4g06571 490 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca4g06571 490 MobiDBLite consensus disorder prediction 463 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06571 Seca-Chr4 133868129 133869601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06571 4 133 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.060 4.56e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06571 - - gmx:102661977 352.058