Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06567 ATGGCTGATGAGGTGGTTTTGCTTGATTTCTGGCCAAGTCCTTTTGGGATGAGGATCAGGATAGCACTTGCTGAAAAGGGTATCAAATATGAATACAAAGAGGAGGACTTGAGGAACAAGAGTCCTCTGCTCCTTCAAATGAACCCTGTTCACAAGAAAATCCCGGTTCTCATCCACAAGGGCAAGTCCATTTGTGAATCTCTCATTGCTGTTCAGTACATTGATGAGGTCTGGAATGATAGATCTCCCTTGTTGCCTTCTGACCCTTATCAGAGGGCCCAGGCTAGATTCTGGGCTGACTTTGTTGACAAGAAGATATATGAACTTGGAAGGAATGTTTGGACCAAAAAAGGGGAAGAACAAGAAGCTGCCAAGAAGGAATTCATAGATGCCCTTAAATTGTTGGAGGAACAGTTGGGAGACAAGACATATTTTGGAGGAGACAAGCTTGGTTTTGTGGATATTGCAATTGTTCCATTCTACAGTTGGTTCAAAGCCTATGAGACCTTTGGCAACCTCAACATAGAGAGTGAGTGCCCGAAGTTCATTGCTTGGGCCAAGAAATGCGTTCAGATAGAGAGCGTTTCCAAGTCTGTTCCTGACCAGCAGAAGGTCTATGCAATGGCAGATGAGGTGATTCTGTTGAATTTCTGGCTAAGCCCTTATGGGATGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAGTATGAGAATAGAGAAGAGGACTTTAGCAACAAGAGCCTTTTACTCCTGCAAATGAACCCAGTTCATAAGAAAATACCAGTTCTCATCCACAATGGCAAACCCATTTGTGAGTCACTCATTGCTATTGAGTATATTGATGAGGTTTGGAATAATCAATCTCCATTGTTGCCTTCTGATCCTTACCAGAGAGCTCAAGCTAGATTTTGGGCTAATTACATTGACAATAAGAGGTTTTGGAAAACTGAAGGAGAAGAGAAAGAAGCTGCCAAGAAAGATTTCCTTGAGTCTCTTAAATTGTTGGAAGAACAGTTGGGAAACAAACCTTATTTTGGTGGAGACAATCTTGGCCTTGTGGATGTCGCTCTTGTTCCTTTGTTCTGTTGGTTAAATACCGATAGTTTCACTGGCAAATTCATTGATGAAGCTCAGTATCCCAATATCATTGCTTGGGCCAAGAGGTGCACTCAAAAAGAGACAATGGCTGATGAGGTTATTCTATTGAATTTCTGGCTAAGCCCTTATGGGATGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAATATGAGAATAGAGAAGAGGACCTTAGCAACAAAAGCCCTTTACTCCTACAAATGAACCCAGTTCATAAGAAAATACCAGTTCTCATCCACAATGGCAAACCCATTTGTGAGTCACTCATTGCTATTGAGTATATTGATGAGGTTTGGAATAATCAATCTCCATTGTTACCTTCTGATCCTTACAAGAGAGCTGAAGCTAGATTCTGGGCTAATTACATTGACAATAAGATATATGAGATTGCCATCAGGTTTTGGAAAACTGAAGGAGAAGAGAAGGAAGCTGCCAAGAAAGATTTCCTTGAGTCTCTTAAATTGTTGGAAGAACAGTTGGGAAACAAACCTTATTTTGGTGGAGGAAACCTTGGCCTTGTGGATGTGGTTCTTGTTCCTTTGTTCTGTTTGTTAAATACCGATAGTTTCACTGGCAAATTCATAGATGAAGCTCAGTATCCCAATATCGTTGCTTGGGCCAAGAGGTGCACTCAAAAAGAGTGTGTGTCCAAGACTTTTCCAGAGGAGCACAAGGTCAAACGTTTTTTAGAGGAGAAAGGATTTAAACATTGA 1836 0.4167 MADEVVLLDFWPSPFGMRIRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVLIHKGKSICESLIAVQYIDEVWNDRSPLLPSDPYQRAQARFWADFVDKKIYELGRNVWTKKGEEQEAAKKEFIDALKLLEEQLGDKTYFGGDKLGFVDIAIVPFYSWFKAYETFGNLNIESECPKFIAWAKKCVQIESVSKSVPDQQKVYAMADEVILLNFWLSPYGMRVRIALEEKGIKYENREEDFSNKSLLLLQMNPVHKKIPVLIHNGKPICESLIAIEYIDEVWNNQSPLLPSDPYQRAQARFWANYIDNKRFWKTEGEEKEAAKKDFLESLKLLEEQLGNKPYFGGDNLGLVDVALVPLFCWLNTDSFTGKFIDEAQYPNIIAWAKRCTQKETMADEVILLNFWLSPYGMRVRIALEEKGIKYENREEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAIEYIDEVWNNQSPLLPSDPYKRAEARFWANYIDNKIYEIAIRFWKTEGEEKEAAKKDFLESLKLLEEQLGNKPYFGGGNLGLVDVVLVPLFCLLNTDSFTGKFIDEAQYPNIVAWAKRCTQKECVSKTFPEEHKVKRFLEEKGFKH. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06567 611 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 210 289 IPR004045 -
Seca4g06567 611 SFLD Main.3: Omega- and Tau-like 208 398 IPR045073 -
Seca4g06567 611 SFLD Main.3: Omega- and Tau-like 396 606 IPR045073 -
Seca4g06567 611 SFLD Main.3: Omega- and Tau-like 2 209 IPR045073 -
Seca4g06567 611 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
Seca4g06567 611 SUPERFAMILY GST C-terminal domain-like 471 604 IPR036282 -
Seca4g06567 611 CDD GST_N_Tau 5 78 - -
Seca4g06567 611 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Seca4g06567 611 FunFam Glutathione S-transferase U20 88 214 - -
Seca4g06567 611 SUPERFAMILY GST C-terminal domain-like 76 208 IPR036282 -
Seca4g06567 611 Gene3D - 292 400 - -
Seca4g06567 611 CDD GST_C_Tau 296 398 IPR045074 GO:0004364|GO:0006749
Seca4g06567 611 SUPERFAMILY Thioredoxin-like 399 476 IPR036249 -
Seca4g06567 611 Pfam Glutathione S-transferase, N-terminal domain 6 76 IPR004045 -
Seca4g06567 611 Pfam Glutathione S-transferase, N-terminal domain 212 283 IPR004045 -
Seca4g06567 611 Pfam Glutathione S-transferase, N-terminal domain 400 471 IPR004045 -
Seca4g06567 611 CDD GST_C_Tau 89 207 IPR045074 GO:0004364|GO:0006749
Seca4g06567 611 FunFam Tau class glutathione S-transferase 1 87 - -
Seca4g06567 611 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Seca4g06567 611 Gene3D - 483 610 - -
Seca4g06567 611 Gene3D - 88 211 - -
Seca4g06567 611 Gene3D Glutaredoxin 212 291 - -
Seca4g06567 611 Gene3D Glutaredoxin 401 482 - -
Seca4g06567 611 Gene3D Glutaredoxin 1 87 - -
Seca4g06567 611 SUPERFAMILY GST C-terminal domain-like 283 406 IPR036282 -
Seca4g06567 611 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 398 477 IPR004045 -
Seca4g06567 611 Pfam Glutathione S-transferase, C-terminal domain 318 393 IPR004046 -
Seca4g06567 611 SUPERFAMILY Thioredoxin-like 212 314 IPR036249 -
Seca4g06567 611 FunFam Tau class glutathione S-transferase 207 294 - -
Seca4g06567 611 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 206 IPR045073 -
Seca4g06567 611 CDD GST_N_Tau 212 285 - -
Seca4g06567 611 Pfam Glutathione S-transferase, C-terminal domain 515 583 - -
Seca4g06567 611 Pfam Glutathione S-transferase, C-terminal domain 122 187 - -
Seca4g06567 611 CDD GST_N_Tau 400 473 - -
Seca4g06567 611 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 483 603 IPR010987 -
Seca4g06567 611 SFLD Glutathione Transferase (cytosolic) 208 398 IPR040079 -
Seca4g06567 611 SFLD Glutathione Transferase (cytosolic) 396 606 IPR040079 -
Seca4g06567 611 SFLD Glutathione Transferase (cytosolic) 2 209 IPR040079 -
Seca4g06567 611 CDD GST_C_Tau 484 600 IPR045074 GO:0004364|GO:0006749
Seca4g06567 611 FunFam Tau class glutathione S-transferase 395 482 - -
Seca4g06567 611 Coils Coil 118 138 - -
Seca4g06567 611 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 295 410 IPR010987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06567 Seca-Chr4 133818584 133827727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06567 396 606 Glutathione S-transferase Gene Family AT1G78380 56.872 1.59e-85 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06567 K00799 - cave:132171408 564.303