Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06562 ATGGCTTCTTTCCCAAGCTTCAACATTGAAACCCAAATTCCAGCAGAGCTTCTGATAGCTCAAATCATGCAACTTCATGCAACCATCTCTAAGCTTGAATCTCTTAGGCCTTCTAAGCAAGTCAATAGCTTGTTGACTCACCTAGTGAAACTGTGCACCCTCCCTTCATCCATTGACATTGAATCTTTACCCCAAGAGGTGAAGATCATGCGTGAGAGTCTCATTGACCTTTGTGGCCGTGCTGAAGGGCTATTAGAGCTTGAATTCTCAACTTTTATAGGCCACACACCGAACCCAATGAACAATTTAACTCTGTTTCCATACTATGGGAACTATGTCAAACTAGCAAACATGGAGAACAAAATCCTCAAAGAAAATGGTGTAGTGCATCCAAAGAAGGTAGCTTTTGTAGGGTCAGGTCCAATGCCACTCACTTCCATCATAATGGCCATTCATCACATGGACACCACCCACTTTGATAACTTTGACATTGATGAGAAGGCCAATGAGGTGGCTCGAAAGATTGTTGCTTCAGATGCAGCACTTGAGAAGAGGATGAAGTTTGAGACGCAAGATATCATGGAAGTTAGAGAGAGGTTGGGGCAATATGATTGCATCTTTTTGGCAGCACTTGTGGGTATGAGTAGAGAAGCAAAATTGAAGATTTTGGGACACATAAGAAAGTATATGAAGGAGGGAGGTTTTTTGGTTGTGAGAAGTGCAAAAGGGGCTAGAGCTTTCTTGTACCCTGTTGTTGAGGAACATGACTTGGTGAATTTTGAGGTGCTTACCATATTTCATCCCACAAATGATGTGATCAACTCAGTTGTTCTTCTTCGCAAGCCTAAAGCTTAA 855 0.4222 MASFPSFNIETQIPAELLIAQIMQLHATISKLESLRPSKQVNSLLTHLVKLCTLPSSIDIESLPQEVKIMRESLIDLCGRAEGLLELEFSTFIGHTPNPMNNLTLFPYYGNYVKLANMENKILKENGVVHPKKVAFVGSGPMPLTSIIMAIHHMDTTHFDNFDIDEKANEVARKIVASDAALEKRMKFETQDIMEVRERLGQYDCIFLAALVGMSREAKLKILGHIRKYMKEGGFLVVRSAKGARAFLYPVVEEHDLVNFEVLTIFHPTNDVINSVVLLRKPKA. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06562 284 Pfam Nicotianamine synthase protein 15 283 IPR004298 GO:0030410|GO:0030418
Seca4g06562 284 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 284 IPR004298 GO:0030410|GO:0030418
Seca4g06562 284 PANTHER NICOTIANAMINE SYNTHASE 3 15 282 IPR004298 GO:0030410|GO:0030418
Seca4g06562 284 CDD AdoMet_MTases 162 238 - -
Seca4g06562 284 Gene3D Vaccinia Virus protein VP39 17 283 IPR029063 -
Seca4g06562 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 240 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06562 Seca-Chr4 133627865 133628719 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06562 17 281 Nicotianamine Synthase Gene Family AT5G04950 51.111 2.92e-93 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06562 K05953 - gmx:100819726 489.574