Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g06548 | ATGGCAGTAGTCTCTGAGTCATCTAGCATCTCTGCCACCTCAGCAACCATTTCCCACAAAGTTGATGAAGAAGTCAACAAAATGAAGGAGAAGGAGGAGGACATCAAATCATCTGAACAAGATCAGGTTTCAAATTCTCATATGGTTCTTGATTTTGTTAAACTACCCACAGATGATTCTGTTCCTAGTGGGTCCAAGTTGCAGGAACTTGATTTTTTCAGTCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGAAGCAACAACAACAATGAAGGGAAGGATGAGAACAGAGAGGAAAAGACAAAGTCAGAGTCAAAGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCACACAAACAACAACGTGGACTAACAAAGCGTCGCCAAGAGATTCAAAACAATGTTGGTGCTTTGGGGCACCCTCATCACTTTCTTTATTACCCTTATCCTAGTCTTTCCAACACACGCCCCTTTCATGGATCATATAATTGGTCACTTGGGGTTAGGATTGAGTCCATGATTCACAAGCCATCCTATTCAAATTCCCCTCTTGGATTCAGATATGGTCATGGTCATGGTGTTATGTGGCCATCAATCCTAAACCCTTCTTCTCATCATAGATTAAGGATTGAGGGTGGTGGAATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAAATGATCATGATGGTAGGAGAACTATTCGAGACATTCTCCAATTGGGAGAGTCTTCTGCAAATGCTGCTACAAGGTCAAACTTAGCCATAAATAAGCCAAATATAGCCCCCAAAGGTGATCATCATTCCAACAATGAAGAACCCTTCAACTCCGAATCCTCTGGGCTTGATCTTTCACTAAAGCTTTAA | 906 | 0.4128 | MAVVSESSSISATSATISHKVDEEVNKMKEKEEDIKSSEQDQVSNSHMVLDFVKLPTDDSVPSGSKLQELDFFSPENKGSSSCWANRSNNNNEGKDENREEKTKSESKTFSCNFCDRKFSSSQALGGHQNAHKQQRGLTKRRQEIQNNVGALGHPHHFLYYPYPSLSNTRPFHGSYNWSLGVRIESMIHKPSYSNSPLGFRYGHGHGVMWPSILNPSSHHRLRIEGGGILGASSTSRIENDHDGRRTIRDILQLGESSANAATRSNLAINKPNIAPKGDHHSNNEEPFNSESSGLDLSLKL. | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 74 | 91 | - | - | |
Seca4g06548 | 301 | Coils | Coil | 21 | 41 | - | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 92 | 107 | - | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 66 | 107 | - | - | |
Seca4g06548 | 301 | SUPERFAMILY | beta-beta-alpha zinc fingers | 107 | 136 | IPR036236 | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 263 | 301 | - | - | |
Seca4g06548 | 301 | Gene3D | Classic Zinc Finger | 88 | 152 | - | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 123 | 142 | - | - | |
Seca4g06548 | 301 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 4 | 301 | IPR044246 | GO:0009788 | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Seca4g06548 | 301 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 110 | 137 | IPR013087 | - | |
Seca4g06548 | 301 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 112 | 132 | IPR013087 | - | |
Seca4g06548 | 301 | MobiDBLite | consensus disorder prediction | 287 | 301 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g06548 | Seca-Chr4 | 132926492 | 132927397 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g06548 | 103 | 217 | C2H2 Transcription Factor Family | AT5G10970 | 45.690 | 2.48e-22 | 92.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca4g06548 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g06548 | - | - | gmx:102663393 | 238.424 |