Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06548 ATGGCAGTAGTCTCTGAGTCATCTAGCATCTCTGCCACCTCAGCAACCATTTCCCACAAAGTTGATGAAGAAGTCAACAAAATGAAGGAGAAGGAGGAGGACATCAAATCATCTGAACAAGATCAGGTTTCAAATTCTCATATGGTTCTTGATTTTGTTAAACTACCCACAGATGATTCTGTTCCTAGTGGGTCCAAGTTGCAGGAACTTGATTTTTTCAGTCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGAAGCAACAACAACAATGAAGGGAAGGATGAGAACAGAGAGGAAAAGACAAAGTCAGAGTCAAAGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCACACAAACAACAACGTGGACTAACAAAGCGTCGCCAAGAGATTCAAAACAATGTTGGTGCTTTGGGGCACCCTCATCACTTTCTTTATTACCCTTATCCTAGTCTTTCCAACACACGCCCCTTTCATGGATCATATAATTGGTCACTTGGGGTTAGGATTGAGTCCATGATTCACAAGCCATCCTATTCAAATTCCCCTCTTGGATTCAGATATGGTCATGGTCATGGTGTTATGTGGCCATCAATCCTAAACCCTTCTTCTCATCATAGATTAAGGATTGAGGGTGGTGGAATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAAATGATCATGATGGTAGGAGAACTATTCGAGACATTCTCCAATTGGGAGAGTCTTCTGCAAATGCTGCTACAAGGTCAAACTTAGCCATAAATAAGCCAAATATAGCCCCCAAAGGTGATCATCATTCCAACAATGAAGAACCCTTCAACTCCGAATCCTCTGGGCTTGATCTTTCACTAAAGCTTTAA 906 0.4128 MAVVSESSSISATSATISHKVDEEVNKMKEKEEDIKSSEQDQVSNSHMVLDFVKLPTDDSVPSGSKLQELDFFSPENKGSSSCWANRSNNNNEGKDENREEKTKSESKTFSCNFCDRKFSSSQALGGHQNAHKQQRGLTKRRQEIQNNVGALGHPHHFLYYPYPSLSNTRPFHGSYNWSLGVRIESMIHKPSYSNSPLGFRYGHGHGVMWPSILNPSSHHRLRIEGGGILGASSTSRIENDHDGRRTIRDILQLGESSANAATRSNLAINKPNIAPKGDHHSNNEEPFNSESSGLDLSLKL. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06548 301 MobiDBLite consensus disorder prediction 74 91 - -
Seca4g06548 301 Coils Coil 21 41 - -
Seca4g06548 301 MobiDBLite consensus disorder prediction 20 40 - -
Seca4g06548 301 MobiDBLite consensus disorder prediction 92 107 - -
Seca4g06548 301 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g06548 301 MobiDBLite consensus disorder prediction 66 107 - -
Seca4g06548 301 SUPERFAMILY beta-beta-alpha zinc fingers 107 136 IPR036236 -
Seca4g06548 301 MobiDBLite consensus disorder prediction 263 301 - -
Seca4g06548 301 Gene3D Classic Zinc Finger 88 152 - -
Seca4g06548 301 MobiDBLite consensus disorder prediction 123 142 - -
Seca4g06548 301 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 301 IPR044246 GO:0009788
Seca4g06548 301 MobiDBLite consensus disorder prediction 1 50 - -
Seca4g06548 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Seca4g06548 301 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Seca4g06548 301 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06548 Seca-Chr4 132926492 132927397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06548 103 217 C2H2 Transcription Factor Family AT5G10970 45.690 2.48e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g06548 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06548 - - gmx:102663393 238.424