Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06541 ATGCTAATGTTTTTCCTTTTTATGTTGCAATTTCAGTGTGATAATGGTCATATTGTGTGCTTTACCTGCTGGACAAAACTTTGGAAGAAGTGTGCCATGTGCTCAATGGCCATTAGCTTCCACCGTTGCAGAGCCATTGAAAATGTACTGCAATCTATCAAAATACCATGTCAGAATGAAAAATATGGTTGCAAAAGGATAATTAGTTACAGTGACAAGAATGAGCATGAAAAGAAGTGCATCTATGAACCTTGTTACTGCCCCCTTTCAGGCTGTGACTTTGTTGCCACATCCAAAGTGTTATCCATCCATGTCAAACATCAGCATGAGGCCTCTCGAATCCAATTTTTATATGATCACTCTTTCTTTGTCTCCTTGAAGCCTGAGGACAAAGCCTTTATTCTTCAAGAGCAAACTGATGGCAAACTTTTTATTCTCAACAACAATGTTATGCATTTGGGATATATGCTCGAAGTAAGATGCATTGGGCCTAACTCTTCCAAGCAGGGATATCATTATGATATATTGGCTAAGTCTCAAAGATGGACTCTGAAGTTAGAATCTTTTATGGAGAACGTTCAGCGAGGAACCTTTGCTACGATTTCCTCAAATTTCCTTGGGATTCCATTTGACAATTTTAGTTCCCTTGAACCTCTCAAGCTCGAAATTTGTATTTACAAAGACAATGCTACACATTCTGCTGAGGACAGAGGTCCATAG 720 0.3889 MLMFFLFMLQFQCDNGHIVCFTCWTKLWKKCAMCSMAISFHRCRAIENVLQSIKIPCQNEKYGCKRIISYSDKNEHEKKCIYEPCYCPLSGCDFVATSKVLSIHVKHQHEASRIQFLYDHSFFVSLKPEDKAFILQEQTDGKLFILNNNVMHLGYMLEVRCIGPNSSKQGYHYDILAKSQRWTLKLESFMENVQRGTFATISSNFLGIPFDNFSSLEPLKLEICIYKDNATHSAEDRGP. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06541 239 ProSiteProfiles Zinc finger SIAH-type profile. 52 110 IPR013010 GO:0008270
Seca4g06541 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 227 IPR044286 -
Seca4g06541 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 105 IPR013083 -
Seca4g06541 239 SUPERFAMILY TRAF domain-like 52 225 - -
Seca4g06541 239 Pfam Seven in absentia protein family 42 201 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06541 Seca-Chr4 132268894 132269613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06541 12 183 C3H Transcription Factor Family AT2G41980 26.630 1.15e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06541 K04506 - mtr:11432566 258.07