Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06490 ATGGCTGAACAAATCCCTTACGGTGTTATTGTAAGCATCATCAATAGATTGGCTTCCTCTGCTTTCCATGAATTTGGACGAATTTATGGAGTTAGAGATGAGCTGGAAAGCCTTAACAAAACTCTTGAATCTATCAAAGTTGTGCTTTCAGATGCTGAGCAGAGACAAGACCAGGATCCCACTATTGGGCACTGGATAAGAAGGTTCAAAGAAGTGCTACATGATGCTGATGACTTGCTCGATGAATTGGCAATTAAAGATATGCGGCTCAAAGTCAACGATCATAGCAAAGTGGTGAATAAGGTGCGTGGCTTATTATTATCCGAAAATCCACTTGCTTTTCGTGTTAAATTAGCTCGTAAGATTGAGAAGATTCGAAAGAAATTCAGTGATGTTGCAGAAGATATGTCTAAGTTGAAACTAAATCCAAGTTTGGTTGTTCTTAAACAATATGAGAGTTCCTGGAGGGAAACAAGTTCTTTTGTTTTGGAATCAAGCATAATTGGCAGGGAAGAAAACAAAATTGAGATTATTGAGTTGCTGAAGCAAACAAATACCAATCAAAATGTTTCTTTGATTGCTATTGTTGGTATGGGGGGTTTGGGCAAGACAGCTCTTGCTCAGTTGGCGTACAATGATGCCCAAGTGCAGAAGCTTTTTGACAAATTCATGTGGGTGTGCATTTCTGAAGACTTTGAAGTAAAATCTGTTCTGAATAAAATATTAAAATCTTTAAAAAATGATGGAGTTGGTGACTTAGATTTAGACATCCTACAAAAGAAGCTTCGAGAAGAATTAAATGGGCAAAGGTATATGCTTGTCCTTGACGATGTGTGGAATGAAAATCAGCTAAAGTGGAATGATTTAAGAACTTATTTGATGTGTGGAGGTCAAGGTAGTAAGATATTAGTGACAACTCGTAGCACAATGGTCTCACAGATAATGGGTGTAAACAACCCGTATGTTTTGAAAGGTTTGAACAAAGAGCAATCGTGGACTTTGTTAAAGAAGTTGACATTTGGTGAAGATGCTAGCAAAATAAGCCCAAATCTAAAATCCATTGGTGAAAAAATTGCAAAAAAGTGCGGTGGTGTTCCACTAGCAATCAGAACAATGGGGGGCTTCTTACAAACTATAAATAAAGAAGAAGATCAATGGTTAAGTATTCTAAATGGTGATGTTTGGAGGTTGTGTGAAGAAAGACAGAGTATTATGCCAGTGCTAAGATTGAGTTACCAAAACTTGCCACTTGGATTAAGACAATGTTTTGCTTATTGCTGTTTGTATCCTAAAGATTGGAAAATTGAAAAGGATGAATTGATTCGATTATGGATGGCTCAAGGCTACCTTGAAAGTTCGATTGAATCGCAATCCATGGAAGATGTGGGCAATCAATATGTCAAGATTTTGTTGATGAGGTCATTTTTTCAAGATGCATCATTGAGTAAAAATAATGATATAGTTTCCTTTAAAATGCATGATTTGATGTATGATCTTGCAAAGTCAGTAGCTGGAAATGATTGCTACCTTCATAGTGAGGGGAAAGGAATTATTGGAAGACCCATGCATGCCTCATTCATATCTAGTACCGTTTGTTCACTGGATTTGTTAGATGCAAGTAAACCACGAACTATTCTTTGGGCCAAAACCATAGTTGGAAGTGTTTTGGATGCCAAACCATCTATCATCAAGAACTTGAAGCCTGTGCGTGTTTTGGATTTGTCACATTCATCTATAACTAAACTGCCACAGTCTATTGATAAATGCAAGCATTTAAGATACTTGGACCTGTCCAATTGTAAAGAACTAATTAGTTTGCCCAAGTCTATTGGCAATCTTGTTAGCTTACAATCTTTGAAATTGTGTGGATGCCGGAAACTTGAATTTTGTACAGAAGTTATCACAAAGTTGATTAGTTTGAGACACCTTGACATTGAAGGTTGTAAAGCCTTTGAAGACATGATGCCTCTCGGATTAGGGCAATTGAGTTCGTTGCAGTCCTTATCAATTTTTGTTGTGGGGGATGATGAGAAGAAGAAATGTGGCAAACTAAATGAATTGAAGGAACTGAATAACATAAGAGGTCATCTGAGAATTAGTCATCTAGGTTTAGTAAAAGATGTGGCATTGGAGTCTCAAGAAGCAAATCTGAAAGCAAAGAAACACATTCAACTCCTGGAGTTGAATTGGGGAAAAAGCAAATATGAATTGGTAGAAGAAAGCAAAAACAATGAGATCCACTTGCAATTATTGGATAACCTTTGCCCTAATCAGAATTTGAGAAAATTGAGAGTAAGTGGGTATCCAGGAGTGAGGTTTTCAAGTTGGCTTCCTTCACTCACTAATATTGTTCAAATCTACTTCTACCGCTTTTCCAATTGCCAACATCTCCCACCATTGGAAAGACTCCCATGGCTGAAGAAGCTCCACATTAGTGAAATGAATGAACTGAAGTACATGCATTATTATGATATTTCTCACGTTTTCTTCCCGTCATTGGAGAGACTCATCCTCTTTGACTGCAAGAATCTTATGGGATGGCAAAAGTTGGCAAATGATGTTGACAACCACTGTTCACTGCCTCCTTTTCCTCGTCTTTCATATTTGGAAATATGGGATTGTCCAAACTTGACTTGCATGCCTACTTATCCATACCTTGTTGAGTTGCGGTTAATTTCTTGTAATGTGAAGCCATTGATTGAAACATGTTTGGTTCAGCTTCATTCTTCCTCCTTCAATCCTCTTTCTGGCCTCAAACAGTTGTATGTTACAGAAATAGACGTAGAAGCAATGCCAAAGAAGTGGATGGAAAATCTCACATCTCTTGAGCATCTCTCTCTTTCAGGATTACTTATTATTGTGCCAATGTTACAACACTTGCGACATCTTTCTGCTGAACTTCAGGATCTGAGAATTTGTCAAGTTGACAAGCTTGATCTGTGGAAAGATGAAAAACCTCATGGGCTCCAATCTCTGCAGAAAATATCCATAGAATTTTGTGACAACCTGAAGGCTTTACCGCAGCAAATCTATGACCTCCAATCACTTAGGCATATTAAGATTCTTCATTGCCATAATTTAGAGTCATTGCCTGAAGGCATGCAATGCCTTACCAATTTACAGACTCTTCGTATCAGCCACTGTCACCTCCTACGAAAGAGATGCCAAATTGGAGAAGATTGGCCAAACATTGTTCACATCCCAAACATAATCATAGATTGA 3222 0.3783 MAEQIPYGVIVSIINRLASSAFHEFGRIYGVRDELESLNKTLESIKVVLSDAEQRQDQDPTIGHWIRRFKEVLHDADDLLDELAIKDMRLKVNDHSKVVNKVRGLLLSENPLAFRVKLARKIEKIRKKFSDVAEDMSKLKLNPSLVVLKQYESSWRETSSFVLESSIIGREENKIEIIELLKQTNTNQNVSLIAIVGMGGLGKTALAQLAYNDAQVQKLFDKFMWVCISEDFEVKSVLNKILKSLKNDGVGDLDLDILQKKLREELNGQRYMLVLDDVWNENQLKWNDLRTYLMCGGQGSKILVTTRSTMVSQIMGVNNPYVLKGLNKEQSWTLLKKLTFGEDASKISPNLKSIGEKIAKKCGGVPLAIRTMGGFLQTINKEEDQWLSILNGDVWRLCEERQSIMPVLRLSYQNLPLGLRQCFAYCCLYPKDWKIEKDELIRLWMAQGYLESSIESQSMEDVGNQYVKILLMRSFFQDASLSKNNDIVSFKMHDLMYDLAKSVAGNDCYLHSEGKGIIGRPMHASFISSTVCSLDLLDASKPRTILWAKTIVGSVLDAKPSIIKNLKPVRVLDLSHSSITKLPQSIDKCKHLRYLDLSNCKELISLPKSIGNLVSLQSLKLCGCRKLEFCTEVITKLISLRHLDIEGCKAFEDMMPLGLGQLSSLQSLSIFVVGDDEKKKCGKLNELKELNNIRGHLRISHLGLVKDVALESQEANLKAKKHIQLLELNWGKSKYELVEESKNNEIHLQLLDNLCPNQNLRKLRVSGYPGVRFSSWLPSLTNIVQIYFYRFSNCQHLPPLERLPWLKKLHISEMNELKYMHYYDISHVFFPSLERLILFDCKNLMGWQKLANDVDNHCSLPPFPRLSYLEIWDCPNLTCMPTYPYLVELRLISCNVKPLIETCLVQLHSSSFNPLSGLKQLYVTEIDVEAMPKKWMENLTSLEHLSLSGLLIIVPMLQHLRHLSAELQDLRICQVDKLDLWKDEKPHGLQSLQKISIEFCDNLKALPQQIYDLQSLRHIKILHCHNLESLPEGMQCLTNLQTLRISHCHLLRKRCQIGEDWPNIVHIPNIIID. 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06490 1073 CDD RX-CC_like 7 134 IPR038005 -
Seca4g06490 1073 Gene3D - 10 138 - -
Seca4g06490 1073 SUPERFAMILY L domain-like 491 896 - -
Seca4g06490 1073 Gene3D - 325 411 IPR042197 -
Seca4g06490 1073 Gene3D - 152 319 IPR027417 -
Seca4g06490 1073 PRINTS Disease resistance protein signature 265 279 - -
Seca4g06490 1073 PRINTS Disease resistance protein signature 362 376 - -
Seca4g06490 1073 PRINTS Disease resistance protein signature 192 207 - -
Seca4g06490 1073 PRINTS Disease resistance protein signature 587 603 - -
Seca4g06490 1073 SUPERFAMILY RNI-like 830 1052 - -
Seca4g06490 1073 Pfam Leucine rich repeat 559 600 IPR001611 GO:0005515
Seca4g06490 1073 Gene3D - 412 503 IPR036388 -
Seca4g06490 1073 Gene3D Ribonuclease Inhibitor 526 672 IPR032675 -
Seca4g06490 1073 Pfam NB-ARC domain 172 413 IPR002182 GO:0043531
Seca4g06490 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 426 IPR027417 -
Seca4g06490 1073 Coils Coil 35 55 - -
Seca4g06490 1073 Gene3D Ribonuclease Inhibitor 680 886 IPR032675 -
Seca4g06490 1073 Gene3D Ribonuclease Inhibitor 887 1058 IPR032675 -
Seca4g06490 1073 PANTHER DISEASE RESISTANCE PROTEIN RP 35 878 IPR044974 GO:0006952
Seca4g06490 1073 FunFam Probable disease resistance protein At1g63360 412 502 - -
Seca4g06490 1073 FunFam Probable disease resistance protein At1g61300 149 320 - -
Seca4g06490 1073 Pfam Rx N-terminal domain 10 96 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06490 Seca-Chr4 130357151 130360372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06490 176 373 WRKY Transcription Factor Family AT5G45050 26.601 1.38e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06490 - - mtr:25487253 1682.92