LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g06487	ATGAGGTTTACGAGTTACATAGCACAGTGGAGAAGTGCAGCGAAAGGAGCACTGGACCGCACAGCGATAACAGTGAAATTCCTATGCTGGCTTCACTTCACCAACAACTACCTTTGCTCCCCAACTCACGTGTATGGGCCCAGCATGCTCCCCACCCTCAATCTCGCCGGCGACGTCGTTATCGCCGAGCATCTCTCTCCGCGCCTCGGGAACCTCGGCCATGGAGACTTGGTTCTGGTGCGGTCCCCTTTGAACCCTAATCGGAGTTTGACCAAGCGCATCGTCGCCATGGAAGGAGACACGGTCACTTACTTTGACCCTTTGCACGCTGATGCTGCTCAAGTTGCAGTGGTGCAATTTTCCATGAATGAATATGCAGAACGAAGAGAATGCATAGGGAACTTTCCTACTTCTTCCATATATATAGAATACAAAGGACAATTTCTTACCAGGTTTATTCAGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTATGCCTCCCATGATTCACGACATTTTGGACCTGTTCCGTATGGTCTTATACAAGGAAAAGTGTTTTTCCGGGTTTGGCCACCTGATAGCTTTGGACTGCTTGGTTAA	609	0.491	MRFTSYIAQWRSAAKGALDRTAITVKFLCWLHFTNNYLCSPTHVYGPSMLPTLNLAGDVVIAEHLSPRLGNLGHGDLVLVRSPLNPNRSLTKRIVAMEGDTVTYFDPLHADAAQVAVVQFSMNEYAERRECIGNFPTSSIYIEYKGQFLTRFIQVPKGHVWIQGDNIYASHDSRHFGPVPYGLIQGKVFFRVWPPDSFGLLG.	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g06487	202	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	201	-	-
	Seca4g06487	202	Pfam	Signal peptidase, peptidase S26	25	193	IPR019533	GO:0004252\|GO:0006465
	Seca4g06487	202	NCBIfam	signal peptidase I	25	195	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g06487	202	CDD	S26_SPase_I	40	188	IPR019533	GO:0004252\|GO:0006465
	Seca4g06487	202	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g06487	202	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g06487	202	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	155	174	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g06487	202	Gene3D	Umud Fragment, subunit A	35	199	-	-
	Seca4g06487	202	SUPERFAMILY	LexA/Signal peptidase	37	201	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g06487	Seca-Chr4	130289377	130297597	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g06487	49	202	MADS-box Gene Family	AT1G29960	38.710	1.06e-31	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g06487	K09647		-	cave:132173278	252.292