Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06479 ATGGATAATTCTATAAATGGTTCCTGCATTAAATTGGAAGAAGATGATGATTCATTATTTGACTCTGGCTGTCATGAGGATGTTAGTGTGGAGGATGGTGATTTTCCTGAGAAGAATGAAAAAGTAGACATTGATGTAGGAGAAGGTCAGTTAAAAAAGATTTTTGACTTAACATTTGATGAATTTCGGTGCCTTGAGTTTGGAAGTGAAGAAGAAGCATTTCGTTATTATGAGTTATATGCAAAATTTCATGGGTTTGTGGTTAGGAAAGATGATGTAACACGGGATATTAGGGGCAATATTATTATGCGTCAGTTTGTTTGCAATAGGGAGGGATTAAGGAAGAAGAAACACTTTATGAGGGTGGATAGGAAGAGGGAACATAGACCACTCACCCGTACAAATTGTCAAGCTAAGCTTTGTATACACTTTGATTACAAGATTTTAAAATGGATAGTTGTGTCATTTGAGGGGTGTCATAACCATGAACTTACCCCTTCAAGATATGTTCACCTACATTCTGCTTATCGTAGGTTGACAGATGGGGATAAGGCCCAAGTTGACATTTTGCATTCATATGGTGTACGAAGTTGTCACATCATGGGGTACCTAGTGGCTCAAAAGGGTGGATATGGTCGCGTTGGCTTTGCAAAGAAGGACATGTACAACTACCTTGACCGAAAAAATCAAGCCAAGATTAAGAAAGGTGATGTACGTGCTGGTTTGAGTTATCTACAAGCTTGTTATGCTGCTGTAGCTGCTGCTTGTGACAATTTGACAAAGGAGAAAGAGGCAGGGGATGCTGTTGAAACTAATGTTTGTGATATGAATCCTCAATGTGCTTCCGTAACTAAAAATGTAAATGAAATGAATGGTGGTGGTAGTTCAGTGTTTTCTAAGGCAGAATTTTGTCAAGGCTTGCCTAATTACCCACCATTTCACATTCCATCAAATGTTAATGGCAACTTTAGTCAAGGTTCAATATTACCGAATCCCGGTATTGCCCACATTCAAGGACAGAGCCCATTCCCAGTTTATAGTCATAATTCACAGATTCCTGTTTTCCCCCCAAATTACCGAGTGGCAAACTTTTCACAAGTTCCTCAGTATTTTTCTGGAGTATGGAATCCTGCTACAAATGCCACCCCTTGGCATAATTTGCTGCAGCAAGTTATGAATGGTGGGAGTCAAATAAGTTGTTTGCGGAATGAAATCATTGTTTTCCCTAAACCAAATATGTGTTACGCTGTAAAGGAAATTTATCGGATGATAAGTGTTTGA 1281 0.3888 MDNSINGSCIKLEEDDDSLFDSGCHEDVSVEDGDFPEKNEKVDIDVGEGQLKKIFDLTFDEFRCLEFGSEEEAFRYYELYAKFHGFVVRKDDVTRDIRGNIIMRQFVCNREGLRKKKHFMRVDRKREHRPLTRTNCQAKLCIHFDYKILKWIVVSFEGCHNHELTPSRYVHLHSAYRRLTDGDKAQVDILHSYGVRSCHIMGYLVAQKGGYGRVGFAKKDMYNYLDRKNQAKIKKGDVRAGLSYLQACYAAVAAACDNLTKEKEAGDAVETNVCDMNPQCASVTKNVNEMNGGGSSVFSKAEFCQGLPNYPPFHIPSNVNGNFSQGSILPNPGIAHIQGQSPFPVYSHNSQIPVFPPNYRVANFSQVPQYFSGVWNPATNATPWHNLLQQVMNGGSQISCLRNEIIVFPKPNMCYAVKEIYRMISV. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06479 426 PANTHER OS01G0519700 PROTEIN 65 245 - -
Seca4g06479 426 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06479 Seca-Chr4 130122378 130125949 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g06479 FAR1 3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06479 - - ccaj:109792835 278.485