Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06473 ATGAAGAATTCCCTGATAATAGCCTTTTCCATAACCATATGCTTCATAGCTTTTGTCATATCCAAGATTTTTATCTCGGTCCTCCTCTACAAAAGATGGAGAAGAAAGCAATTGATTTATGAAGGTTTTACAGGAGGGAAGATGGTGATATTTAGGTCTTCAGTGCTTAAATCTCTCACATCTGATATGGTCTTAAAGAAGACACAGAAACTGAACAACAAGGACATTATTGGATCAGGAGGTTATGGTGTAGTTTATGAACTAAAACTAGATGACTCCACAGCCTTTGCTGTGAAAAGGCTAAACCGTGGAACTGCAGAGAGAGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACTCTTCATGGATATTATAGTGCACCACACTACAATCTTCTCATATATGAGCTAATGCCTAATGGAAGGAGATCAATGGACAAGAAGGTTTTGGATTGGCCAACCAGATACAGAATAGCTGTAGGTGCAGCTAGAGGAATATCATATCTTCACCATGATTGTATCCCTCACATTATCCACAGAGACATTAAATCAAGTAATATATTGCTGGATCAAAACATGGAGGCTCGAGTTTCTGATTTTGGATTAGCCACCTTGATGGAACCAAACAAAACTCATGTTTCAACAATTGTGGCTGGAACTTTTGGATATTTGGCACCAGAATATTTTGATACAGGAAGAGCAACAGTCAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTACTGGAGCTTTTAACAGGGAAAAAACCCTGTGATGAAGCATTTATGGAAGAGGGAACCAAGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGAGAAGAAAGAGGAGCTAGTTCTTGATAGTAGCTTAGGGTCTTGTCCAATGCAAGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGATCCCTTGAAGAGGCCAACCATGGCTGAGGTTGTCAACTTGCTTGAGCAAACAGAATCAAACCAACTTGTTACAGCATCCTGA 1041 0.4025 MKNSLIIAFSITICFIAFVISKIFISVLLYKRWRRKQLIYEGFTGGKMVIFRSSVLKSLTSDMVLKKTQKLNNKDIIGSGGYGVVYELKLDDSTAFAVKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYSAPHYNLLIYELMPNGRRSMDKKVLDWPTRYRIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPCDEAFMEEGTKLVTWVKAVVREKKEELVLDSSLGSCPMQEVNKVFNIAMMCLEPDPLKRPTMAEVVNLLEQTESNQLVTAS. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06473 346 ProSiteProfiles Protein kinase domain profile. 71 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06473 346 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 143 345 - -
Seca4g06473 346 Gene3D Phosphorylase Kinase; domain 1 47 146 - -
Seca4g06473 346 SMART serkin_6 71 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06473 346 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Seca4g06473 346 FunFam Receptor-like serine/threonine-protein kinase 42 146 - -
Seca4g06473 346 Pfam Protein kinase domain 73 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06473 346 SUPERFAMILY Protein kinase-like (PK-like) 51 336 IPR011009 -
Seca4g06473 346 Gene3D Transferase(Phosphotransferase) domain 1 147 345 - -
Seca4g06473 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Seca4g06473 346 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06473 Seca-Chr4 130084024 130087423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06473 5 336 Receptor kinase-like Gene Family AT2G35620 45.748 1.49e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca4g06473 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06473 - - ahf:112703495 580.867