Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06447 ATGGTGGTTCATAGAGATCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATATTGCGTAAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGGGATGGTCACTTTCTTAAGACAAGTTGTAAAAGCCCCAACTATGCAGCTGCTGAGGTTTGGAATTCTTTGATTTGTTATCTCTGGGAAATTGTATGCTGGACCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTTTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGTGTTGTTAATGGGAGGACCTAGTCATCTATCACCCTGTGCTAGAGATTTGATACCAAGGATGGTTGTGGTAGACCCTATGAAGAGGATGACCATACCTGAGATCCGTTAA 393 0.3995 MVVHRDLKPENLLLDSKYCVKIADFGLSNIMRDGHFLKTSCKSPNYAAAEVWNSLICYLWEIVCWTCGVILYALLCGTFPFDDENIPNLFKKIKVLLMGGPSHLSPCARDLIPRMVVVDPMKRMTIPEIR. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06447 130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 2 14 IPR008271 GO:0004672|GO:0006468
Seca4g06447 130 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06447 130 PANTHER SERINE/THREONINE KINASE 1 129 - -
Seca4g06447 130 Pfam Protein kinase domain 2 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06447 130 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Seca4g06447 130 SUPERFAMILY Protein kinase-like (PK-like) 2 129 IPR011009 -
Seca4g06447 130 SMART serkin_6 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06447 Seca-Chr4 129551321 129552815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06447 2 130 CBL-interacting serine-threonine protein kinases AT4G24400 45.926 1.95e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca4g06447 Pkinase 5.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06447 K07198 - gmx:547544 204.912