Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06421 ATGAATAATATGGAGGAGAGCACAGAGTCTCGAAAGCAAGCGAGGCTGGCCATTCTAGAACTGGCGAACATGATAAGTGTCCCCATGTCCCTAAACGCCGTCGTTCGGCTCAACGTCGCCGATGCCATCTGGCAAGCCGGCTCCAACGCCCCTCTTTCCGCTGCCGAGATCCTTCCACGCGTCCTTCCGACCGGCGGCGGTGACGCCGAGAACCTCCAGCGCATCCTGCGCATGCTCGCCTGTTACGGCGTCTTCGAGGAGCATCTCAGCGGCGGCGAAAGGAAGTACTCCCTAACGGACGTTGGGAAAACGCTTGTCACCGATGACCAAGGCCTATCCTACGCTGCTTATGTGCTCCAACACCACCAGGATGCGTTGATGCGAGCATGGCCATTGGTACATGAGGCAGTTGTGGACCCTACGAGGGAACCCTTCGAGAGGGCAAATGGAGAGGCAGCGTACAGTTATTACTTGAAGCAACCAGAGATGAATGAGTTAATGGTGAAGGCCATGTCAGGGGTGTCAGTGCCCTTTATGAGGGCCATATTGGACGGCTACGATGGCTTCCAAGGTGTGGAGAAGCTTGTGGATGTGGGTGGCAGTGGCGGTGATTGCCTTCGTATGATCCTTCAGAAACATCCCACCGTCAAGGAAGGGATTAACTTTGACCTCCCTCAAGTGGTTGCCAAGGCACCGCAAATTCCAGGTGTTACCCACGTGGGTGGAGACATGTTCAAAGCTATTCCTCAAGGGGATGCTATCTTCATGAAGTGGGTGCTAACAACATGGACCGACGAGGAATGCAAGCACATAATGCAGAACTGTTACAAGGCACTCCCAAAGGGAGGGAAACTAATTGCTTGTGAGCCAGTGCTGCCAGAGCATTCAGATGAGAGTCACAGAACCAGGGCATTGCTTGAAGGTGACATATTCGTGATGACAATCTACAGAGCCAAGGGGAAGCACAGGACTGAGGAACAGTTCAAGCAGCTTGCCATTTCCGCTGGTTTCCCTCGTTTCAGAGCCTTTCATTTCGACTATTTCTATGCTCTACTTGAGTTTCAGAAATGA 1071 0.5285 MNNMEESTESRKQARLAILELANMISVPMSLNAVVRLNVADAIWQAGSNAPLSAAEILPRVLPTGGGDAENLQRILRMLACYGVFEEHLSGGERKYSLTDVGKTLVTDDQGLSYAAYVLQHHQDALMRAWPLVHEAVVDPTREPFERANGEAAYSYYLKQPEMNELMVKAMSGVSVPFMRAILDGYDGFQGVEKLVDVGGSGGDCLRMILQKHPTVKEGINFDLPQVVAKAPQIPGVTHVGGDMFKAIPQGDAIFMKWVLTTWTDEECKHIMQNCYKALPKGGKLIACEPVLPEHSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFKQLAISAGFPRFRAFHFDYFYALLEFQK. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06421 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 356 IPR016461 GO:0008168
Seca4g06421 356 PANTHER O-METHYLTRANSFERASE 21 346 IPR016461 GO:0008168
Seca4g06421 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 354 IPR029063 -
Seca4g06421 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Seca4g06421 356 Pfam O-methyltransferase domain 134 337 IPR001077 GO:0008171
Seca4g06421 356 Gene3D Vaccinia Virus protein VP39 111 356 IPR029063 -
Seca4g06421 356 Gene3D - 2 110 IPR036388 -
Seca4g06421 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Seca4g06421 356 FunFam Caffeic acid 3-O-methyltransferase 111 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06421 Seca-Chr4 128781156 128784608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06421 6 356 Monolignol Biosynthesis Gene Families AT3G53140 78.371 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06421 - - gmx:100784957 649.432