Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06417 ATGGGAAGGGGCACGATCCTGCTGAAGCAGATTGAGAACAAAATCAGCCGCCAAGTCACCTTTTCAAAGCGAAGAATGGGTACACGAAAGAAAGCCCATGAAATCTCTAAGTTATGTGATGCTCCAGTAGCAGTGATTGTCTTCAACGCTAAAGGGAAACTCAGTATTCATCTGAATCTAGGTTTTTACTTCATCATTTGCATCACCCTTTGA 213 0.4272 MGRGTILLKQIENKISRQVTFSKRRMGTRKKAHEISKLCDAPVAVIVFNAKGKLSIHLNLGFYFIICITL. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06417 70 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g06417 70 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g06417 70 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g06417 70 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g06417 70 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 55 - -
Seca4g06417 70 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Seca4g06417 70 Gene3D - 13 58 IPR036879 GO:0003677|GO:0046983
Seca4g06417 70 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Seca4g06417 70 SUPERFAMILY SRF-like 2 58 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06417 Seca-Chr4 128738852 128739064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06417 1 54 MADS-box Gene Family AT1G26310 72.222 1.37e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g06417 SRF-TF 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06417 K09264 - gmx:100820188 88.5817