Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g06417 | ATGGGAAGGGGCACGATCCTGCTGAAGCAGATTGAGAACAAAATCAGCCGCCAAGTCACCTTTTCAAAGCGAAGAATGGGTACACGAAAGAAAGCCCATGAAATCTCTAAGTTATGTGATGCTCCAGTAGCAGTGATTGTCTTCAACGCTAAAGGGAAACTCAGTATTCATCTGAATCTAGGTTTTTACTTCATCATTTGCATCACCCTTTGA | 213 | 0.4272 | MGRGTILLKQIENKISRQVTFSKRRMGTRKKAHEISKLCDAPVAVIVFNAKGKLSIHLNLGFYFIICITL. | 71 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g06417 | 70 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 55 | - | - | |
Seca4g06417 | 70 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | Gene3D | - | 13 | 58 | IPR036879 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | ProSiteProfiles | MADS-box domain profile. | 1 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Seca4g06417 | 70 | SUPERFAMILY | SRF-like | 2 | 58 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g06417 | Seca-Chr4 | 128738852 | 128739064 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g06417 | 1 | 54 | MADS-box Gene Family | AT1G26310 | 72.222 | 1.37e-20 | 79.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Seca4g06417 | SRF-TF | 1.8e-19 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g06417 | K09264 | - | gmx:100820188 | 88.5817 |