Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06415 ATGCAGCAAGATCAGCTCAAGAAGGATATTAAAGAGGTAGAGTTTTTTACTGAGTATGGGGATGCCAACAGATACAAAATTCTTGAAGTTATTGGGAAAGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACACACACAGGGGGAAAAGTTGCAATAAAGAAGATTCATGACATTTTTGAACATATCTCTGATGCCATTAGAATCCTCCGGGAAGTCAAGTTGCTAAGACTTTTAAGACACCCTGATATTGTTGAGATTAAGCGGATCATGTTGCCACCTTCAAAGAGGGAGTTTAAAGATATTTATGTAGTCTTTGAGCTCATGGAATCTGATCTCCATCAAGTCATCAAAGCTAATGATGACTTGACTCGTGAACACCATCAGTTTTTTCTTTATCAGATGCTACGTGCATTGAAGTATATGCATACAGCAAATGTATATCACAGAGACCTTAAGCCCAAGAATATACTGGCAAATGCAAACTGCAAACTCAAAGTATGTGATTTTGGACTGGCAAGAGTTGCATTCAATGATGCCCCAACAACAATATTTTGGACGGATTATGTTGCTACAAGATGGTACAGAGCCCCAGAATTGTGTGGGTCTTTCTTTTCAAAGAATGTAAAATATGCTCAACCCAAAAAGGAGAAATTGAAATGGAGGAATATTGATCTCTCCTGGAAGTTGAATTTATCTGTCCTTCAGTATACACCAGCAATTGATATATGGAGCATTGGATGCATTTTTGCAGAGGTGCTAACAGGAAAGCCATTGTTTCCTGGTAAAAGTGTTGTGCATCAATTAGATTTGATTACTGATCTTCTTGGGACACCACCACCTGAAACAATTACAGGAGTTCGAAATGAGAAGGCTAGGAAGTACTTGATGGAAATGCGGAAGAAACCTCCTGTGCCATTTGAACAGAAATTTCCAAATGCCGATCCATTGGCACTTCGCCTACTACAAAGGCTTTTAGCATTTGATCCAAAGGATCGGCCAACTGCTCAAGAGGCACTAGCTGATCCTTTCTTTAAGGGTTTGGCCAAAGTTGAGAGAGAACCTTCTTCTCAGCCAATTTCAAGATTGGAATTTGAGTTTGAGAGAAGACGAGTGACAAAGGACGATGTTAGGGAATTATTATATAGGGAAATACTTGAATATCATCCTCAGCTGCTTAAAGATTACATAAATGGACTTGAAGGCACAAACTTCCTCTACCCTAGTGCAGTAGATCAATTCAGAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGCGGCCCAGTGATTCCTCCAGAAAGGAAGCACGTCTCCCTTCCAAGGTCCACTGTTCACTCTAGTACAATTCCTCCTACTATACAGCCATCTTTTGGTTCATATGAGAACAAGCGGATCATAGAAGAGGCATCCAAGATTTCAAGAGCAGCAGAATCAAACTCTGGAAGTCAATTGAGGAGTTCACGACCTCCACCAAGGGCGCCAACAGGAAAACCAGGTAGAGTTGTAGGGCCAGTTAACTATGACAACGCGACAAACATAAAAGATACTTATGACTCGAGGATCTTCTACCGAAATACTCTTCCTCAAGCAATCTCTCCACACTGTTTCCATAGGATGCACCCCAATAACGCAAAAACTACATCAGAAACATATAAGGATATTTCACAAGGAAAACATCAACTTTCATCCCAGCAGTGTAGCATGCCAGCCAGACCAGCTATTGATCTTAATACCAATCCATATTTCCAGCAGGGCAAAAATGATCACTTAAATGATCCTGTCACTGCAATTGATGCAAAACTGATTCAGGCACAATCTCAATTTGGTGCTGCTTCAGTAGCTGTTGCTGCTCACAGGCATCCAGGGGTCTTTCAGTATGGATTGTCATAG 1896 0.4072 MQQDQLKKDIKEVEFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKIHDIFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTIFWTDYVATRWYRAPELCGSFFSKNVKYAQPKKEKLKWRNIDLSWKLNLSVLQYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPPPETITGVRNEKARKYLMEMRKKPPVPFEQKFPNADPLALRLLQRLLAFDPKDRPTAQEALADPFFKGLAKVEREPSSQPISRLEFEFERRRVTKDDVRELLYREILEYHPQLLKDYINGLEGTNFLYPSAVDQFRKQFAYLEENHGKSGPVIPPERKHVSLPRSTVHSSTIPPTIQPSFGSYENKRIIEEASKISRAAESNSGSQLRSSRPPPRAPTGKPGRVVGPVNYDNATNIKDTYDSRIFYRNTLPQAISPHCFHRMHPNNAKTTSETYKDISQGKHQLSSQQCSMPARPAIDLNTNPYFQQGKNDHLNDPVTAIDAKLIQAQSQFGAASVAVAAHRHPGVFQYGLS. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06415 631 CDD STKc_TDY_MAPK 24 390 - -
Seca4g06415 631 MobiDBLite consensus disorder prediction 475 509 - -
Seca4g06415 631 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 378 - -
Seca4g06415 631 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Seca4g06415 631 MobiDBLite consensus disorder prediction 425 459 - -
Seca4g06415 631 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca4g06415 631 Gene3D Transferase(Phosphotransferase) domain 1 109 204 - -
Seca4g06415 631 Pfam Protein kinase domain 236 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06415 631 Pfam Protein kinase domain 25 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06415 631 Gene3D Transferase(Phosphotransferase) domain 1 232 368 - -
Seca4g06415 631 FunFam Mitogen-activated protein kinase 109 213 - -
Seca4g06415 631 SUPERFAMILY Protein kinase-like (PK-like) 22 390 IPR011009 -
Seca4g06415 631 ProSiteProfiles Protein kinase domain profile. 25 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06415 631 SMART serkin_6 25 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06415 631 FunFam Mitogen-activated protein kinase 14 119 - -
Seca4g06415 631 MobiDBLite consensus disorder prediction 475 491 - -
Seca4g06415 631 MobiDBLite consensus disorder prediction 443 459 - -
Seca4g06415 631 Gene3D Phosphorylase Kinase; domain 1 369 391 - -
Seca4g06415 631 FunFam Mitogen-activated protein kinase 216 367 - -
Seca4g06415 631 Gene3D Phosphorylase Kinase; domain 1 23 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06415 Seca-Chr4 128656986 128661959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06415 1 629 MAP Kinase Gene Family AT1G53510 67.951 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca4g06415 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06415 - - gmx:100800878 1092.8