Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06390 ATGGTTGGATTCCAGAGTGATCAAATTCCTGGGAACAACTATAATGGTAATTATAATAGTTCTCCGGGTCGTGTTGGACGACTTGTGAGAGTAAGAGAGCTAAGAAGAAGCAGCAAGACTTCTCTTTCAAACGAGTCTCCTAATAATAGTCATAATAATAATAATAATAACATTCATGTGGTTACTGAATCTTTTGAGCATGACCTGCGCTTAAGAGAAGATAATAATAACTCTGGTGCTACCTATGTTGAACGATTCCCTGATGGGGTGGCAGTAGCAAGGGCTCTTGGTGTGGGATATTTCCAAAGGGAAGATGGGAAGCCTTTCAAACAACGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCAGCAGTTAGGAGAGGTGAGGATTCATGGTCTTTGGAGATGAGTGCTGGTGGCCTGGTAAGCGCTCTTTTAGGTGTGAACGAATTTGATACAAGGTGGATAGGTTGGGCCGGTGTCAATGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAAATTGTTCATCAATACTATAATGGATATTGCAACAACATTTTGTGGCCTCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAGTCTCAGTTTGCAGCGTATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAATAAGCACTATGAAGAGGGAGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACAGCAACATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAAATTCACAGGACACTTCCATCTCGTTCAGAGCTCCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTATGATTATGCACGGCATTTTGTCAGTGCTTGTACTCGCATTCTTGGACTTGAGGGCACACCTGAAGGGGTTGAGGATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTCCAGGATCACATCAAAGATTTACAAGAAAGATTTAAAGGAAGAAAGGTGATGTTAGGTGTTGATCGCCTAGATATGATTAAAGGAATTCCTCAAAAAATTCTAGCATTTGAAAAATTTCTGGAAGAAAATGCAGATTGGCGTGAAAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAAGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACATTGACTGCTGTTCCTATTCATCACCTGGATCGCTCTCTTGACTTTTATGCACTATGTGCTTTGTACGCTGTTACAGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCACAGTCTCTTGGTGCTGGGGCAATTCTGGTCAACCCCTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGCCTTCTGCAGAAAGAGAGAAGAGACATAGGCATAACTTTCATCACGTTAAAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGATGAGGCACAAAAAAGGACAAAACAAGTTCCACCACGGCTTCCAACCAAGACTGCAATTGAACGTTATGTGCAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACCATAACTGAACCAGTGGAGAAAAAAGGTGATCAGTATAAAGAAATGGAACTCACAGTGCATCCAGAACTGAAACAACCCTTGACAGAACTTTGCAGTGACCCAAAGACCACAGTTGTAGTGCTTAGTGGCAGTGGTAGAACAGTTCTAGATGAAAACTTTAAAGAATATGACATGTGGCTGGCAGCAGAGAATGGTATGTTTTTAAACTCTTCAAAGGGAGAATGGATGACAACAATGCCAGAACAACTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACGCCTAGGTCACATTTTGAAGAAAGGGAAGCTTCACTTGTTTGGAATTACAGACATGCAGATGTTGAGTTTGGAAAAGTTCAAGCAAGGGACATGTTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTACAAGGGACCCGATCTGTTGAAGTGCGAGCTGCGGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTCTGTGCATAGGACATTTTCTGGGAAAGGATGAAGATATATATGCCTTTTTTGAGCCAGAGCTTCCTTCTATTGGTGTGGGTGTTCAACGAAGTAAGGTAACAGAAGGGGTTAAGTTTCCTGTTGAGAGGATATCATCTTTGAAGATCCCAGCAAGTAAAAATGGACTAAAGTCATCTCAAAATAAGGGACAGCGACCTCTGTCAAATAATGAGAAGAAAACAACTAACCATGTGTGTCGTGCACCGCGGCGGCCAGTTCCTGAAAAGATATCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGTGCTGTTGGACGAACTCAAACAAATGCTCGGTATACGCTGGGATCATCTGATGATGTTGTTGCATTTCTCAAGGAACTAGCGGATGCATCTTCAAACCATTAA 2838 0.4211 MVGFQSDQIPGNNYNGNYNSSPGRVGRLVRVRELRRSSKTSLSNESPNNSHNNNNNNIHVVTESFEHDLRLREDNNNSGATYVERFPDGVAVARALGVGYFQREDGKPFKQRLLVVANRLPVSAVRRGEDSWSLEMSAGGLVSALLGVNEFDTRWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFIRALDLPQVQDHIKDLQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENADWREKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMPSAEREKRHRHNFHHVKTHTAQEWAETFVSELNDTVDEAQKRTKQVPPRLPTKTAIERYVQSTNRLLILGFNGTITEPVEKKGDQYKEMELTVHPELKQPLTELCSDPKTTVVVLSGSGRTVLDENFKEYDMWLAAENGMFLNSSKGEWMTTMPEQLNMEWVDSVKHVFEYFTERTPRSHFEEREASLVWNYRHADVEFGKVQARDMLQHLWTGPISNASVEVVQGTRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDIYAFFEPELPSIGVGVQRSKVTEGVKFPVERISSLKIPASKNGLKSSQNKGQRPLSNNEKKTTNHVCRAPRRPVPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDDVVAFLKELADASSNH. 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06390 945 NCBIfam trehalose-phosphatase 608 835 IPR003337 GO:0003824|GO:0005992
Seca4g06390 945 MobiDBLite consensus disorder prediction 40 58 - -
Seca4g06390 945 Gene3D Glycogen Phosphorylase B; 359 562 - -
Seca4g06390 945 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g06390 945 SUPERFAMILY HAD-like 609 939 IPR036412 -
Seca4g06390 945 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 359 562 - -
Seca4g06390 945 Gene3D - 613 837 IPR023214 -
Seca4g06390 945 CDD GT20_TPS 112 577 IPR001830 GO:0003824|GO:0005992
Seca4g06390 945 Gene3D Glycogen Phosphorylase B; 104 358 - -
Seca4g06390 945 Pfam Trehalose-phosphatase 615 843 IPR003337 GO:0003824|GO:0005992
Seca4g06390 945 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 111 580 - -
Seca4g06390 945 MobiDBLite consensus disorder prediction 1 58 - -
Seca4g06390 945 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 699 779 - -
Seca4g06390 945 Gene3D - 699 779 - -
Seca4g06390 945 CDD HAD_TPP 610 841 - -
Seca4g06390 945 MobiDBLite consensus disorder prediction 859 882 - -
Seca4g06390 945 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 104 358 - -
Seca4g06390 945 Pfam Glycosyltransferase family 20 112 577 IPR001830 GO:0003824|GO:0005992
Seca4g06390 945 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 105 940 IPR001830 GO:0003824|GO:0005992
Seca4g06390 945 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 112 577 IPR012766 GO:0003825|GO:0005992
Seca4g06390 945 MobiDBLite consensus disorder prediction 859 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06390 Seca-Chr4 127559454 127574856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06390 9 944 Trehalose Biosynthesis Gene Families AT1G78580 75.786 0.0 1467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06390 K16055 - gmx:100789554 1622.45