Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06385 ATGAAGATTCAGTGCAACGTGTGTGAAGCTGCGGAAGCTAAGGTTCTGTGCTGTGCTGATGAGGCGACACTGTGTTGGGAATGTGATGAGAAGGTTCATGCAGCTAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTTTCTTCCTCTTCCTCTCATATTCCTAAATGTGATATTTGTCAGTTCAAAAGAGTTAGAAGTGTTTGTCATTTTGCATCAGCATCTGATGATGGTAGAGTCTGCTACTCCTTACAGGAAGCATTAGGCTATTTCTTCTGTCTGGAGGATCGAGCTTTACTCTGCAGAAAATGCGATTTGGCAATTCACACTGTAAATGCATATGTCTCCGGTCATCAAAGGTTTCTTCTCACTGGTGTTAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGCTTCATCATCTTCTTTGAAATCAGATTCTGGGGAGAAAGTGTCTGATACAAAATCTTCTCCTGTCTCTAGAAAGGTTTCCACAATGCCTCAGTCATCAGATTACAATGAAGTTTTACCCACTGAAGTTGGAGGAAGTGGGGAGTTTCCACCAACTAAGGTGTCTTATGGTGGTGGTTCTACAGCTGGAAACATGTCACAATGGACGCTTGATGAATTTCTTGGCCTAAATGAGTTAAATCAGAATTATAATTACATGGAAGAATCATCAAGGCAGCCTGACAGTGGTAAGCTTGGGGATTCTGATTCTCCTGTATTAAGATCCAGTGAAGAGGAAATGGAGGATGATGACTACTTACGACGCGATACAGATTCATCATGGACAGTTCCTCAGATACCTTCCCCTCCTACAGCTTCTGGGTTAAACTGGCCAAAAGACTCTCAATATTCATCTAATAGTGCTTTATTTGTTCCTAACATTTGCTTTTCTAGCATGCAAAGGCCACACAAAAGTATATTTTCAAGACCAAGGAGGCATCTTTAA 951 0.4217 MKIQCNVCEAAEAKVLCCADEATLCWECDEKVHAANKLASKHQRVPLSSSSSHIPKCDICQFKRVRSVCHFASASDDGRVCYSLQEALGYFFCLEDRALLCRKCDLAIHTVNAYVSGHQRFLLTGVRVGLEATEPGASSSSLKSDSGEKVSDTKSSPVSRKVSTMPQSSDYNEVLPTEVGGSGEFPPTKVSYGGGSTAGNMSQWTLDEFLGLNELNQNYNYMEESSRQPDSGKLGDSDSPVLRSSEEEMEDDDYLRRDTDSSWTVPQIPSPPTASGLNWPKDSQYSSNSALFVPNICFSSMQRPHKSIFSRPRRHL. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06385 316 MobiDBLite consensus disorder prediction 260 281 - -
Seca4g06385 316 SMART bboxneu5 76 123 IPR000315 GO:0008270
Seca4g06385 316 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca4g06385 316 MobiDBLite consensus disorder prediction 134 175 - -
Seca4g06385 316 CDD Bbox1_BBX-like 5 47 - -
Seca4g06385 316 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Seca4g06385 316 CDD Bbox1_BBX-like 80 123 - -
Seca4g06385 316 ProSiteProfiles Zinc finger B-box type profile. 76 123 IPR000315 GO:0008270
Seca4g06385 316 MobiDBLite consensus disorder prediction 223 281 - -
Seca4g06385 316 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g06385 316 MobiDBLite consensus disorder prediction 134 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06385 Seca-Chr4 127359223 127363128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06385 1 314 C2C2-CO-like Transcription Factor Family AT1G78600 44.602 1.55e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06385 - - gmx:100790959 464.922