Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06377 ATGAACATGACTTCCCCTCGATTGTTCCACCTTTGCTGGCTTCTTTGCTTTTATTTGGTCTCTTCTTTTGCTAGTGGAGCTACTCTGTTAAAAGAAGAAGTGCAAATTTTGAAAGACATAGGTAAGACACTTGGGAAGAAGGATTGGGACTTCAGTGTAGATCCGTGCAGTGGACAGAGTAACTGGACATCATCTGTTCAAGTGAAAGGGAGCGAAAATGCTGTCAGCTGCAATTGCTCTTTAGCTAATGCCACAGTCTGCCATGTTGTTAGCATTGTTCTCAAGTCTCAAAATCTTACGGGCACACTCCCAGGTGAACTGGTGAAGTTGCCTTACCTCCAAGACATTGACCTCACGCGCAACTACCTTAATGGTACAATCCCTCCACAATGGGGCTCCATGAACCTTGTCAACATTTCCCTTCATGGAAACCGAATAACGGGTCCAATCCCAAAAGAACTAGGAAACATCACCACCCTGAAAAGTTTGGTCCTGGAGTTCAATCAATTATCTGGAAAGCTTCCTTCAGAGCTTGGAAACCTCCCCCGGCTTGAAAGACTGCTTCTCACCTCCAACTATTTAACTGGAAATTTACCTGCAACATTTGCTAAGCTCACTATGCTAAAGCACCTTCGACTCAGCGACAATCAATTCTCTGGAGCCATACCTAATTTCATTCAAAGCTGGACAAGTCTGGAGAGGCTGGTGATGCAAGGGAGTGGTTTGAGTGGCCCAATTCCTTCTGGAATTTCATTTCTTCAAAACCTCACTGACTTGAGAATTAGTGACCTGAAAGGAGCAGATTCTTATTTTCCGCAACTTAATAACTTGACAAATTTGCAAACACTAGTACTGAGGAGCTGCAATCTTATAGGAACTGTTCCTGAATATCTTGGAAATATGACTAATTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCGAACATCTTGGGTGGCCTAGAGAACATGAATATACTATATTTAACAGGAAACAATTTTACTGGACCACTTCCCAACTGGATAGCTAGACCAGACTACACAGATCTCTCATATAACAACTTGAGCATCAATAACCCAGATCAGTTGACATGTCAACAGGGAACTGTGAACTTATTTGCATCATCTTTGAGGGGAAATAACTCTGATCATCTTATTGGGCTTGTTTTTTATTTTGTTCTCCCAGCTTGGTACTCTCTCCATATAAATTGTGGTGGAAAGCTCATAACTTCTAATGAAAGAATGACATATGATGATGATTCAAATGAAGCCGGACCTGCAACATCTTACCGGACTGGATCAAATTGGGCAGTTAGCAACACTGGTCACTTCTTTGATAGTGGCCGCATAGACTACTACACCTGGTCTAACTCAACTAAGCTTGCTATGGACAATGGTGAACTGTATATGGATGCACGTGTTTCTCCCCTTTCTCTCACATATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCTGAGATAATGTTCACTGATGATCAAACATATTCTAGCCTCGGAAGGCGTGTATTTGACATTTATATTCAGAGAAAGTTAGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAAAAGTTCACTGCTATTGTGACTAATAATACCTTGGAGATCCGCTTTCATTGGGCCGGGAAAGGGACAACTGGTATCCCGTTTGGATCAGTACATGGTCCTCTTATATCAGCTATATCTGTTGATCCTGACTTTACACCCCCAGTGGAAAATGGAAGAAGCATACCTGTGCGGTCTATTGTTGCAATTGTAGTTGCTGGAGCACTTGTTATCATCATAGTATTTGGTATAGCTTGGTGGAGAGGATGTTTACGACAGAAAGGTTCATTAGAAAGAGGGCTAAGGGGTTTAGATCTGCAAACTGGCTTATTTACCTTACGGCAAATCAGAGCAGCAACTAACAACTTCGATATTGCCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTCAGATGGCACCGTCATAGCAGTTAAGCAGCTTTCTTCTAAATCAAATCAAGGGAATCGTGAATTTATAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCGTGTCTAGTTAAGCTCTATGGCTGTTGTATGGAGGGAGATCAGTTGTTGTTGATATATGAATACATGGAAAACAATAGCCTTGCTCGTGCTTTGTTTGCCCGGGAAAAAGGTCAATTGATGTTGGATTGGTCAACAAGGCGGAGTATTTGTGTTGGTATTGCTAGAGGTTTGTCTTACCTCCATGGAGAATCAAAGCTAAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATAAAGATCTCAATCCAAAGATATCTGATTTTGGCTTGGCCAAGCTTAAAGAAGAGGGCTATACCCACATAACCACCAGAGTAGCTGGCACTTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACTGAGAAAGTAGATGTTTATAGTTTTGGAGTCGTTGCCTTGGAAGTTGTTAGTGGGAAGAGCAACACCATGAACTGGCCAAAGGAAGAATGCTTCTCTCTTGTTGATTGGGTGCATATCTTGAAAGAAGAAGGTAATATAATGGAACTAGTTGATGAGAGGTTGGGTGATAACTTCAAAAAAGAGGAAGTAATGGTCATGATCAATGTAGCCCTTCTATGCACACAAGTTTCTCCAATGCAAAGGCCCACCATGTCCTCAGTGGTAAGCATGCTTGAAGGCAAAACTGTTGTTCAAGAGGTGGTTCCAGACACAAACCAAGTGTTTGAAGGCAAGAAATTGGAGGTTATCCAACAGTATTGCCGGCAGAGAGAAAAAAATGAGACCCCTGAGTCTCAAGAAGAGAGCATCTCAATAGATGAAACTGCAGCATTCATGTCTGATACAGATCTATATTCTGTCAACAAGGATTCTTCTTATTGGGAGAAAAGTGATTAG 3024 0.4137 MNMTSPRLFHLCWLLCFYLVSSFASGATLLKEEVQILKDIGKTLGKKDWDFSVDPCSGQSNWTSSVQVKGSENAVSCNCSLANATVCHVVSIVLKSQNLTGTLPGELVKLPYLQDIDLTRNYLNGTIPPQWGSMNLVNISLHGNRITGPIPKELGNITTLKSLVLEFNQLSGKLPSELGNLPRLERLLLTSNYLTGNLPATFAKLTMLKHLRLSDNQFSGAIPNFIQSWTSLERLVMQGSGLSGPIPSGISFLQNLTDLRISDLKGADSYFPQLNNLTNLQTLVLRSCNLIGTVPEYLGNMTNLRSLDLSFNKLSGQIPNILGGLENMNILYLTGNNFTGPLPNWIARPDYTDLSYNNLSINNPDQLTCQQGTVNLFASSLRGNNSDHLIGLVFYFVLPAWYSLHINCGGKLITSNERMTYDDDSNEAGPATSYRTGSNWAVSNTGHFFDSGRIDYYTWSNSTKLAMDNGELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYSSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGKAIIKKFTAIVTNNTLEIRFHWAGKGTTGIPFGSVHGPLISAISVDPDFTPPVENGRSIPVRSIVAIVVAGALVIIIVFGIAWWRGCLRQKGSLERGLRGLDLQTGLFTLRQIRAATNNFDIAFKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSNQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAREKGQLMLDWSTRRSICVGIARGLSYLHGESKLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKEEGYTHITTRVAGTYGYMAPEYAMHGYLTEKVDVYSFGVVALEVVSGKSNTMNWPKEECFSLVDWVHILKEEGNIMELVDERLGDNFKKEEVMVMINVALLCTQVSPMQRPTMSSVVSMLEGKTVVQEVVPDTNQVFEGKKLEVIQQYCRQREKNETPESQEESISIDETAAFMSDTDLYSVNKDSSYWEKSD. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06377 1007 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06377 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 368 - -
Seca4g06377 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Seca4g06377 1007 Gene3D Ribonuclease Inhibitor 268 396 IPR032675 -
Seca4g06377 1007 Gene3D Phosphorylase Kinase; domain 1 636 738 - -
Seca4g06377 1007 CDD STKc_IRAK 669 936 - -
Seca4g06377 1007 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Seca4g06377 1007 SMART LRR_typ_2 205 228 IPR003591 -
Seca4g06377 1007 SMART LRR_typ_2 301 324 IPR003591 -
Seca4g06377 1007 SMART LRR_typ_2 181 204 IPR003591 -
Seca4g06377 1007 Gene3D Transferase(Phosphotransferase) domain 1 739 950 - -
Seca4g06377 1007 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06377 1007 ProSiteProfiles Leucine-rich repeat profile. 303 325 IPR001611 GO:0005515
Seca4g06377 1007 SUPERFAMILY L domain-like 84 359 - -
Seca4g06377 1007 Gene3D - 402 590 - -
Seca4g06377 1007 SUPERFAMILY Protein kinase-like (PK-like) 647 942 IPR011009 -
Seca4g06377 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 952 - -
Seca4g06377 1007 Pfam Protein kinase domain 668 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06377 1007 Gene3D Ribonuclease Inhibitor 193 267 IPR032675 -
Seca4g06377 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Seca4g06377 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 591 - -
Seca4g06377 1007 Pfam Malectin domain 403 586 IPR021720 -
Seca4g06377 1007 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Seca4g06377 1007 Pfam Leucine rich repeat 278 338 IPR001611 GO:0005515
Seca4g06377 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Seca4g06377 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 192 - -
Seca4g06377 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06377 Seca-Chr4 127049331 127060712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06377 20 957 Receptor kinase-like Gene Family AT1G53420 54.246 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06377 Pkinase 8.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06377 - - gmx:100786496 1604.73