LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g06376	ATGAAGATGATTGCTCTCTTCCTTTCACTCCTTGCGATTTGGTTCTCATCGCATGCTTTTGGTGCTAATACGACTACTCAGCCAGACGAAGTGCAAGCACTGATAGATATAGCTAAGACACTTGGTAAGAAGGATTGGAACTTCAACATAGATCCATGCAGTGAACAACCTAACTGGGTTAAGCCTACAGTGAACGGAGTAGAGAACAACGTCACCTGCAATTGCTCTGTCGTCAATGACAACTTCTGCCATGTTGTTAGGATATTGCTGAAGTCACAAAATCTCCAGGGCAAGCTCCCACCGGAACTGATAAAGTTGCCTTACCTGGAAGAAATTGTGCTCGAGTTCAATAACTTCTCTGGAAATCTTCCTTCAGAACTTGGGAACCTTCCTCACATTCAAAGACTGCATCTTACCTCGAACAATTTTACCGGAGAATTGCCTGAAACTTTTGCGAGACTTACATCATTGACGGAACTCCGACTTAGTGACAATCAATTTTCTGGGAAGATACCCGATTTTATTCAAAGATGGACAAATCTTAGTATACTGATATTAAGGGGTTGCAACATTAATGACACATTACCTAAATATCTTGGAAACATGACGAGCGTGAATACTTTAGAATCCTTAGACCTCAGCTATAACAAATTAAGTGGAGTCATCCCTGAAAACTTTGAACAGCTATCAAGATTAACTTACATATATTTAACAGCAAATTTATTCACCGGATCAGTACCCAAGTGGACGGAGAAAACTAATAATAATAAATACAGAGATCTTTCTTTTAACAAGTTCAACGATGAAAGCATCGAACAATGTCAGCAGACAACAGCAGGACTGAACTTGTTTGCAAGCTTCCCAACAAGCAATAATGGACCTATTTATTGTCCGAGAAGCAATGGATGTCTAAAGACATATACCTCTTTCCATATAAACTGTGGTGGTGGAAAATTGAAAAACAGTGAAGGTATAATATATGATGATGATGATTCAGATCCAGCTGGACCAGCAACATCTAAAGTGCATGGAGAAAATTGGGCATTTAGCAGTACCGGTCACTTCTTGGATAATAGTACTATAGCAAAGTCCTATATTCAACAAAATAAAACTAGACTTTCTATGGCTGATTCTGATCTATATGAGACTGCTCGTGTTTCCCCCATTTCTCTGACTTATTACGGATTTTGTCTAGAAAATGGAGAGTACACAGTTAAACTCTACTTTGCAGAGATAATGTTCACTGATGATGACACGTTTAGTAGCCTTGGGAGACGTATATTTGATATCTACATACAGGGAGAGCCAGTAGAAAGGGATTTCAATATTGCAAATGAAGCCCAAGGAGTTGGAAAGGAAAAAATAATGCAATTTCCAGCTTATGTAAGTAATAATTCATTAGAGATCCGCTTCCATTGGGCTGGGAAAGGAACAAGAGCTATCCCATATCCATCAGTATATGGCCCTCTTGTATCAGCTATATCTGTCAGTCGTGACTCTAGAGGTAGTGGCATATCTGCAGGGGCTATTGTTGGAATAGTGGTTGCAGCTGTTTTTATTGTCATCCTAGTTATACTTTGGTGGGGAGGTTGCATAGGAATAAAGAGTTCATTAACTAAAGAACTAAAGGACTTGGATCGACAAACTGGTTTATTTACCTTACGTCAAATCAAAACAGCAACAAATAACTTCAATATTTCCAATAAAATTGGAGAAGGAGGCTTTGGTCCTGTTTATAAGGGAGATCAATTGTTACTGGTATATGAATATATGCAAAACAATAGTCTTGCACACGCTTTATTTGGTCGTGAAGAATCTTGTTTAAAATTGGATTGGCCAACAAGGCACAAGATCTGTGTTGGTATTGCAAGAGGATTGGCTTTCTTGCATGAAGAATCGAGATTGAAAATTGTTCATAGGGATATTAAGGCCACTAATGTGTTGTTAGACAAAGACCTAAACCCAAAGATATCGGATTTTGGTTTGGCTAAACTTGATGAGGAGGACAATACACATATAAGTACTCGAATAGCTGGGACCTATGGATATATGGCTCCAGAATATGCAATGCATGGTTATTTGACTGAGAAAGCAGATGTATATAGTTTTGGAATTGTTGCCCTGGAAATCGTTAGTGGAAAGAGCAACACCATCCACCGGGCAAAGGAAAAATCTTTGTATCTTCTTGATTGGGCACATTTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATCATAAGTTGGGTTTAAATTTCAATGAAGAGGAGGTATTGGTGATGATCAATGTTGCTCTTTTATGCACCAATGCCACTTCAAACCTTAGGCCTAGTATGTCATTAGTGGTAAGCATGCTTGAAGGCAAAATTGTGGTTCCAGAATTTGTTTCAGATCCAAATGAGGTAATGGATGAAATGAAGTTAGAGGCAATGCGACAGTATTACCATGAAGCCGAAGAAAATAAGATAAATGAGACACAAACACAGAGTCAAAATTTATTAATGGATGGGCCATGGACTGCTTCATTTTCATCAGCTGCAGATCTTTATCCCGTCGACATTGGTTCTTCCTATTGGGAGAGAAGAAATTGA	2592	0.3862	MKMIALFLSLLAIWFSSHAFGANTTTQPDEVQALIDIAKTLGKKDWNFNIDPCSEQPNWVKPTVNGVENNVTCNCSVVNDNFCHVVRILLKSQNLQGKLPPELIKLPYLEEIVLEFNNFSGNLPSELGNLPHIQRLHLTSNNFTGELPETFARLTSLTELRLSDNQFSGKIPDFIQRWTNLSILILRGCNINDTLPKYLGNMTSVNTLESLDLSYNKLSGVIPENFEQLSRLTYIYLTANLFTGSVPKWTEKTNNNKYRDLSFNKFNDESIEQCQQTTAGLNLFASFPTSNNGPIYCPRSNGCLKTYTSFHINCGGGKLKNSEGIIYDDDDSDPAGPATSKVHGENWAFSSTGHFLDNSTIAKSYIQQNKTRLSMADSDLYETARVSPISLTYYGFCLENGEYTVKLYFAEIMFTDDDTFSSLGRRIFDIYIQGEPVERDFNIANEAQGVGKEKIMQFPAYVSNNSLEIRFHWAGKGTRAIPYPSVYGPLVSAISVSRDSRGSGISAGAIVGIVVAAVFIVILVILWWGGCIGIKSSLTKELKDLDRQTGLFTLRQIKTATNNFNISNKIGEGGFGPVYKGDQLLLVYEYMQNNSLAHALFGREESCLKLDWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIVALEIVSGKSNTIHRAKEKSLYLLDWAHLLKEKGNLMELVDHKLGLNFNEEEVLVMINVALLCTNATSNLRPSMSLVVSMLEGKIVVPEFVSDPNEVMDEMKLEAMRQYYHEAEENKINETQTQSQNLLMDGPWTASFSSAADLYPVDIGSSYWERRN.	864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g06376	863	Pfam	Leucine rich repeat	107	167	IPR001611	GO:0005515
	Seca4g06376	863	Pfam	Leucine rich repeat	180	241	IPR001611	GO:0005515
	Seca4g06376	863	Pfam	Protein tyrosine and serine/threonine kinase	576	785	IPR001245	GO:0004672\|GO:0006468
	Seca4g06376	863	SUPERFAMILY	L domain-like	69	268	-	-
	Seca4g06376	863	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	637	649	IPR008271	GO:0004672\|GO:0006468
	Seca4g06376	863	Gene3D	-	305	500	-	-
	Seca4g06376	863	Gene3D	Phosphorylase Kinase; domain 1	533	587	-	-
	Seca4g06376	863	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	307	499	-	-
	Seca4g06376	863	FunFam	Leucine-rich repeat receptor protein kinase EMS1	99	198	-	-
	Seca4g06376	863	ProSiteProfiles	Protein kinase domain profile.	468	796	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g06376	863	ProSiteProfiles	Leucine-rich repeat profile.	207	228	IPR001611	GO:0005515
	Seca4g06376	863	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	591	798	-	-
	Seca4g06376	863	Gene3D	Ribonuclease Inhibitor	26	303	IPR032675	-
	Seca4g06376	863	Gene3D	Transferase(Phosphotransferase) domain 1	591	796	-	-
	Seca4g06376	863	Pfam	Malectin domain	309	494	IPR021720	-
	Seca4g06376	863	SUPERFAMILY	Protein kinase-like (PK-like)	547	807	IPR011009	-
	Seca4g06376	863	Coils	Coil	816	836	-	-
	Seca4g06376	863	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	15	117	-	-
	Seca4g06376	863	SMART	serkin_6	564	786	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g06376	Seca-Chr4	126989228	127009138	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g06376	20	816	Receptor kinase-like Gene Family	AT1G53420	43.547	0.0	701

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca4g06376		PK_Tyr_Ser-Thr	1.6e-30	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g06376	-		-	gmx:100785451	1136.32