Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06375 ATGAATGACATTGAATTATATAAGAATGCACGTATTTCCCCTATGTCTTTGAGTTATTATGCATTTTGCCTGGAAAATGGAGACTACACGGTTAAGCTCCACTTTGGTGAGATAATGTTCACTGATGATAACACATATAGCAGCCTAGGGAGGCGTGTATTTGATGTCTACATTCAGGGAAATCGTGTACTAAAGGATTTCAACATTGCAAAGGAAGCACAAGGAGTTGGCAAGGAACTTACAAAACAATTTCCTGTTCATGTGACTACTAATGACTTAGAGATTCGTTTCTATTGGGCTGGCAAAGGGACAACATACATCCCATATAAATCAATAAATGGTCCTCTTATATCAGCTATATCTGTTGAGTATGGGCTCTTATGTAATAATCAAACAGATTCTACAAGTGGCAGCATATCTACAGGGTCTAATTTTGCAATTGCAGCTGCAGCGGTGATTGTTGTCATCTTGATTATTATCGGCATACTTTGGTGGGGAGGTTGTATAGGGAAAAAACATTTATTAGTAAGAGGGCTAAAGGATTTAGATCTGCACATTGGTTTATTTACCTTGCGTCAAATAAAAGCAGCAACAAATAACTTTGATATTTCTAATAAGATCGGCGAAGGTGGCTTTGGTCCTGTATATAAGGGCATTCTGTCAAATGGCACAGTAATAGCAGTCAAACAACTTTCACCTAAATCAGAGCAAGGAAACCGTGAGTTCATAAATGAGATAGGCATGATCTCAACTTTGCAGCATCCTTATCTAGTTAAACTTTATGGTTGTTGTATCGAGGGAGATCAATTGTTGGTGGTATATGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTGTCACAAAAGGTCCAGAAGAATGTCGTTTAAAATTGAATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTTCCTGCATGAAGAATCAAGACTGAAAGTTGTTCACAGGGACTTAAAGGCAGCTAATGTGTTGCTTGACAAAGATTTGAGCCCAAAGATATCTGATTTTGGTTTGGCGAAACTCAATGAGGAGGACACTACTCACATAAGCACGAGAATAGCTGGGACCTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTACTTGACTGAGAAAGCAGATGTCTATAGTTTTGGAATTATTTCCTTGGAACTTGTAAGTGGAAAGAGAAACACTATTCACCGGTCAAAAGAAGAAGCATTCTATCTTCTTGATTGGGCACGTCTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATCCAAGGTTGGGTGTCGATTTCAATGAAGAGGAGGTAATAACGATGGCCAAAGTGGCCCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCCTCCATGTCTTCTGTGCTAAGCATGCTTGAGGGCAGAATTGTGCTTCCAGAATTTGTTCCACATCCAAGTGAGGTAATGGATGAGATTAAATTGGAAGCAATGAGAGAGTTTTACGGTCAGTTAGAAGGAAATAAAATAAGTGAGGCACAAAGTATGAGCTTGACAACTAACGTACCATGGACTACTTCATCTTCATCAACTACAGACCTCAATCCTCTCCATCTTGATGCTTCCCATTTGGAGGAAAAGAAATTAATAGAGTCCGTATAA 1668 0.3915 MNDIELYKNARISPMSLSYYAFCLENGDYTVKLHFGEIMFTDDNTYSSLGRRVFDVYIQGNRVLKDFNIAKEAQGVGKELTKQFPVHVTTNDLEIRFYWAGKGTTYIPYKSINGPLISAISVEYGLLCNNQTDSTSGSISTGSNFAIAAAAVIVVILIIIGILWWGGCIGKKHLLVRGLKDLDLHIGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGILSNGTVIAVKQLSPKSEQGNREFINEIGMISTLQHPYLVKLYGCCIEGDQLLVVYEYMENNSLAHALFVTKGPEECRLKLNWPTRQKICVGIARGLAFLHEESRLKVVHRDLKAANVLLDKDLSPKISDFGLAKLNEEDTTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIISLELVSGKRNTIHRSKEEAFYLLDWARLLKEKGNLMELVDPRLGVDFNEEEVITMAKVALLCTNATSNLRPSMSSVLSMLEGRIVLPEFVPHPSEVMDEIKLEAMREFYGQLEGNKISEAQSMSLTTNVPWTTSSSSTTDLNPLHLDASHLEEKKLIESV. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06375 555 FunFam Putative LRR receptor-like serine/threonine-protein kinase 277 486 - -
Seca4g06375 555 Pfam Malectin domain 2 120 IPR021720 -
Seca4g06375 555 CDD STKc_IRAK 207 477 - -
Seca4g06375 555 SUPERFAMILY Protein kinase-like (PK-like) 184 492 IPR011009 -
Seca4g06375 555 SMART serkin_6 201 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06375 555 ProSiteProfiles Protein kinase domain profile. 201 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06375 555 Gene3D Phosphorylase Kinase; domain 1 176 276 - -
Seca4g06375 555 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 170 276 - -
Seca4g06375 555 Pfam Protein kinase domain 203 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06375 555 Gene3D Transferase(Phosphotransferase) domain 1 277 480 - -
Seca4g06375 555 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 512 - -
Seca4g06375 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672|GO:0006468
Seca4g06375 555 Gene3D - 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06375 Seca-Chr4 126599238 126602274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06375 3 521 Receptor kinase-like Gene Family AT1G53420 58.317 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06375 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06375 - - gmx:100791136 822.002