Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06370 ATGAATTTGAGTTCCCCTCATTTCTTCTTTATCTTGCTCCTTGTTACCTCTTGCTTTGCCTCCTTAGCATTTGGAGCCACCCTGTCACAAGATGAAGTGCAAGCTTTGAAAGATATAGGTAAGACACTTGGGAAGAATTGGGATTTTGGCGTAGATCCATGCAGTGGAGAACGTAACTGGAGATCCTCTGTTAGCGAAAATGCTGTCCACTGCAATTGCTCCTTTGTCAATGGCACCATTTGTCACGTCACCAACATACTCTTGAAAGCACAAAATCTCCCCGGCACTCTTCCATCCGAACTGACCAGGTTACCTTACCTTCAAGAAATCGACCTTACTCGCAACTACTTGAATGGTACAATTCCTAAAGAATGGGGCTCCATGAATCTTGTCAATATCTCCCTCCTTGGAAATCGATTAAGAGGTTCAATACCGGTGGAGATTACAAACATATCCACCCTCCAAAGTTTAGTCTTGGGGTCCAATCAACTATCAGGCAAACTTCCCCTTGAACTTGGGAATCTAACTCAAATTCAAAGATTGTTACTTTCCTCCAACAATTTTACGGGAGAACTACCTGTTACATTGGCGAAACTCACTACATTGCAAGATTTTCGAATTGGGGATAATCAATTCTCTGGGAAGATACCAGATTTTATTCAAAGCTGGACAAGTCTTAAGAAATTAGTCATTGAAGGGAGTGGATTAAGTGGACCAATTCCTTCTGGAATTTCACTTCTAAAGAACTTAACTGACTTGAGAATTAGTAATTTGAATGGATCTGAATATTCACCTTTTCCGCAACTCAATGACTTGAAATTAAAAAATTTGATTTTGAGGAATTGCAACATCAATGGAACACTACCGTCAGATCTTGCGACAATGACAAGTTTAAAAAATTTAGACCTCAGCTTTAACAAATTGACTGGGCCAATCCCGAATACCTATGAAGCCTTAAGAAAAGTGGATTACATATATTTAACCGGAAACCTTCTTACGGGAGAAGTGCCTACATGGACAGAGAAAGCCGACAATGTAGATATTTCATATAATAACTTCAGCATTGGAAGCAAAGGAAGTCAGACATGTCAAGATGGAAATGTGAACTTGTTTGCTAGCACGCACAATGAATCAGCAATAGTTTCATGTTTGAGAAGCTTTGTTTGCCCCAAAACCTCATACTCTCTTCATATAAATTGTGGTGGAAAACCGATTACCATCAATACGAGCACATATGATGATGATTCAGATGTAGGAGGACCAGCTAGATTCCAACACAGTGGAACAAAAAACTGGGCATTTAGCACCACTGGTAACTTCATGGATAATGATGGTGGAAACTATTATACCTGGTCAAATAAATCTGAGCTTTCTATGACCAATGCTGAATTATATATGAATGCACGAGTGTCTCCCATCTCTTTAACTTATTATGGATTCTGCTTGGGGAATGGAAACTACACGGTAAATCTACATTTTGCAGAAATCATGTTCATTGATGATCGAACATATAACAGCCTAGGAAGACGTGTATTTGATATCTACATTCAGGGAAAGTTGGTGCACAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAGCGGGTAAAGTGATCACCAAACAATTCACTGTTGTTGTGACTAGTAATACCTTGGAAATCCGCTTATATTGGGCTGGAAAAGGGACAACCAGTATCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGAACCTGACTTTACACCTCCCTCTGAAAACGGAAGCAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGTAGTAGCTGTTATCATGTTGGTCTTTGGTATACTCTGGTGGAAAGGATGTTTGGGGAAGAAAAACACTTTAGCAAGAGAGCTAAAGGGTTTAGACCTACAAACCGGTGTATTTACATTTAGACAGATCAAAGTTGCAACAAACAACTTTGATATTGCCAATAAGATTGGAGAAGGGGGATTTGGTCCTGTGTACAAGGGATGTCTACCAGATGGAACATTAATAGCAGTCAAGCAACTTTCTTCAAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAAATAGGCATGATTTCTGCTTTGCAGCACCCTTGTCTTGTTAAACTATATGGATGTTGTGTGGAGGGAGATCAACTATTGTTGATATATGAATATATGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTAATTCGATCACTATCACATTCACAAATATAGGCCCCGAAGAACACCAAATAAAATTGGATTGGCCAACAAGGTACAAGATTTGTATTGGTATTGCTAGAGGTTTGGCACACCTCCATGAAGAATCAAGGCTAAAGGTTGTTCATAGGGACATCAAGGCTACTAATGTGTTGCTTGATGAAGATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGCTCGATGAAGAGGACAATACCCACATTAGCACTCGAATAGCTGGGACATATGGGTATATGGCTCCGGAATATGCCATGCATGGTTATTTGACTGATAAGGCAGATGTTTATAGCTTTGGAATTGTTGCCTTGGAAATAATAAATGGAAGGAATAACACCACTCATCGACAAAAAGAAGAAGCATTCTATCTTCTTGATTGGGCACGTCTATTGAAAGAGAAAGGTAATCTAATGGAGTTAGTTGATAGAAGATTGGGTTCAGAATTCAACAAAGAGGAGGTAATGGTGATGATCAACATGGCTCTCCTATGTACTAATGTGACTCCAACACTTAGGCCTACCATGTCTTCAGTGGTAAGCATGCTAGAAGGTAGGATTGTTGTTCCGGAAGTGGTTTCAGAGACAAGTGAGGTATTGGATGAGAAGAAGTTAGAGGCAATGCGACAATTTTATCATGAGCAAAGTATTTCAATGGAAGGGCCGTGGACTACTTCATCTACTTCTGCAGCAGACCTTTATCCTGTACACTTGGATTCTGCTTACTTGGAGAAGAGAAATTAG 3006 0.3972 MNLSSPHFFFILLLVTSCFASLAFGATLSQDEVQALKDIGKTLGKNWDFGVDPCSGERNWRSSVSENAVHCNCSFVNGTICHVTNILLKAQNLPGTLPSELTRLPYLQEIDLTRNYLNGTIPKEWGSMNLVNISLLGNRLRGSIPVEITNISTLQSLVLGSNQLSGKLPLELGNLTQIQRLLLSSNNFTGELPVTLAKLTTLQDFRIGDNQFSGKIPDFIQSWTSLKKLVIEGSGLSGPIPSGISLLKNLTDLRISNLNGSEYSPFPQLNDLKLKNLILRNCNINGTLPSDLATMTSLKNLDLSFNKLTGPIPNTYEALRKVDYIYLTGNLLTGEVPTWTEKADNVDISYNNFSIGSKGSQTCQDGNVNLFASTHNESAIVSCLRSFVCPKTSYSLHINCGGKPITINTSTYDDDSDVGGPARFQHSGTKNWAFSTTGNFMDNDGGNYYTWSNKSELSMTNAELYMNARVSPISLTYYGFCLGNGNYTVNLHFAEIMFIDDRTYNSLGRRVFDIYIQGKLVHKDFNIVEEAGGAGKVITKQFTVVVTSNTLEIRLYWAGKGTTSIPFRSVYGPLISAISVEPDFTPPSENGSSISAGAVVGIVVAVVAVIMLVFGILWWKGCLGKKNTLARELKGLDLQTGVFTFRQIKVATNNFDIANKIGEGGFGPVYKGCLPDGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPCLVKLYGCCVEGDQLLLIYEYMENNSLARALFGNSITITFTNIGPEEHQIKLDWPTRYKICIGIARGLAHLHEESRLKVVHRDIKATNVLLDEDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIINGRNNTTHRQKEEAFYLLDWARLLKEKGNLMELVDRRLGSEFNKEEVMVMINMALLCTNVTPTLRPTMSSVVSMLEGRIVVPEVVSETSEVLDEKKLEAMRQFYHEQSISMEGPWTTSSTSAADLYPVHLDSAYLEKRN. 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06370 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 393 583 - -
Seca4g06370 1001 Gene3D Ribonuclease Inhibitor 273 352 IPR032675 -
Seca4g06370 1001 Gene3D Transferase(Phosphotransferase) domain 1 731 952 - -
Seca4g06370 1001 SUPERFAMILY L domain-like 67 338 - -
Seca4g06370 1001 Gene3D Ribonuclease Inhibitor 194 272 IPR032675 -
Seca4g06370 1001 SUPERFAMILY Protein kinase-like (PK-like) 638 969 IPR011009 -
Seca4g06370 1001 Pfam Protein tyrosine and serine/threonine kinase 657 937 IPR001245 GO:0004672|GO:0006468
Seca4g06370 1001 CDD STKc_IRAK 661 939 - -
Seca4g06370 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase 731 949 - -
Seca4g06370 1001 Gene3D Phosphorylase Kinase; domain 1 624 730 - -
Seca4g06370 1001 SMART serkin_6 655 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06370 1001 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 192 - -
Seca4g06370 1001 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 624 730 - -
Seca4g06370 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 972 - -
Seca4g06370 1001 Gene3D Ribonuclease Inhibitor 31 193 IPR032675 -
Seca4g06370 1001 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Seca4g06370 1001 Gene3D - 391 582 - -
Seca4g06370 1001 FunFam Leucine-rich repeat transmembrane protein kinase 195 396 - -
Seca4g06370 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Seca4g06370 1001 ProSiteProfiles Protein kinase domain profile. 655 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06370 1001 Pfam Malectin domain 395 578 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06370 Seca-Chr4 126415374 126429325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06370 22 986 Receptor kinase-like Gene Family AT1G53420 57.186 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06370 PK_Tyr_Ser-Thr 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06370 - - gmx:732563 1553.88