Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06369 ATGGGACGTCGACACAACAAGATGTGGTTTGTGATTTCAAGCTTCAAACGCGTATCTGTGTTCTTCTATGTGTTCCTCGCTTTGAATTGCTTCGGAGAGTTTGGATCCAACGCTCAACTCATACCACAAGATGAAGTGAAATTACTACAAACAATATCAGACAAGGTAGAGAACTTGAATTGGAAAGTTACAGAACGTTCCTGCAGTGGGGATAATGGATTTGGTAACCAGGATATCTCAGGGGATCAAATCACAAGGAATGTCACGTGTGATTGCTCTTTCAACGCTAGCACCATTTGCCATGTGAAATTTATCGTGCTCAAGGGCCTCAATATATCCGGAGTTATGCCAAGCGAATTTGGAAATCTTACTCAACTGAAAATACTTGATCTCACTCGGAATTATATAAACGGCTCAATTCCAAAAAGTCTTGGACGCCTCTCTCTTGTGACTCTGTCACTTTTGGGAAATCGACTTAGTGGTCCAATTCCCTCAGAAATCGGTGATATTGCTAGTTTGCAAGAACTGAACTTAGAAGATAATCAACTTGGAGGACCACTTCCTCCCAGCCTTGGAAATTTAAGAAGCTTACTGAGATTATTGCTTTCTGCAAATAACTTTACAGGGACAATACCAGAGACATTAGGCAATCTAAACAATCTCACTCAGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAGATACCCAATTTTATTGGGAACTGGAGCAAACTTGAAAGATTGGATTTGCAGGGCACATCCTTGGAAGGCCCAATTCCTCCTGCCATATCTAGCTTGACAAATCTGAAGGAATTGAGAATATCTGATTTGACGGGACCAACTATGACATTTCCTGATCTGAAGAATATGAAACGAATGCAAAGACTGGAATTGAGGAATTGCTTAATCACCGGTCCCATTCCAGGCTATATTGGACAAATGGAAAATTTAAAAACACTAGATCTGAGCTCCAACGGGTTGACTGGTCCAATCCCAGATTCACTTGAGGACTTGGACTCAATAAATTTTATGTTTCTGAGTAACAACTCTCTGAATGGATCAATTCCTGGATGGATACTGAACAACAAACAGAATATTGATTTATCTTTGAACAATTTTACAGAGTCTTCTGCATCTAATTGCCAGCTCTTGGATGTGAACTTAGCTTCTAGCTACTCTCCTTCAGCAAGCACTTCGTTGTCTTGTTTGAAGAAGGGCCTACCTTGTTCAGGAAAACAACAGTTTCATTCACTATTCATAAACTGTGGAGGACCTGAACTGGAGTCTGAGGGTAATGAATATGAAGCCGATACCAATCTACGTGGCATTTCAAACTTTGTTACTAGTAATGACGGCAAATGGGCTTATAGCAGCACTGGAGTATATCTAGGAAATGAAAAAGCTGATTATGTAGCAACAAATGTGTTCTCTTTGAATATTAGTGGCCCTGAATACTACCAAACAGCCCGCATTTCCCCTCTGTCTCTTAATTACTATGGCCTTTGTATGCTGAAGGGAAATTATAATGTGAAGCTTCATTTTGCTGAGATAATGTTTTCTGATGACAAGACATTCAGCAGCCTTGGAAGGCGTATATTTGATGTTTCAATTCAAGGTATTAAATATTTGAAAGATTTTAACATTGTGAAAGAAGCTAATGGAGTTGGCAAGGGAATCATTAGGGAGTTTAATGTTGATGTTAATGATAGCACCCTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTGTGAGAGGTGTATATGGACCTCTTATATCTGCCATCACTGTGACCCCAAACTTTAAAATTCCTTCAAACGGGCTGTCTGCTGGAGCAATTGTTGGAATTGTGGTTGGATCATGCGTGTTTGTCATACTGATACTATTTGTCCTTTGGAAGATGGGTTTCCTTGGAGGGAAAGATCCAACAGACAAAGAACTTCTAGATCTGAAAACGGGCTATTTCAGTTTGAGACAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAATAAAATAGGTGAAGGAGGCTTCGGGCCAGTATACAAGGGTGTATTGTCAGATGGTGCAACGATTGCTGTCAAGCAGCTCTCCTCCAAATCAAAACAAGGGAACCGTGAATTCGTTACTGAAATAGGAATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAATTGCTGCTTATATATGAATATATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAAGAACAAAGGTTGCACTTGGACTGGCCCACAAGGATGAAGATTTGTGTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGGGATATTAAGGCAACCAATGTCTTACTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACTCATATCAGCACACGAATAGCTGGGACAATTGGCTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGAGTTGTGGCTTTAGAGATTGTTAGTGGAAAGAGCAACACCAATTACAGGCCAAAGGAGGAGTTTGTTTATCTTCTGGATTGGGCCTACGTTCTCCAAGAGCAAGGAAATCTTCTGGAATTGGTTGATCCAAGTCTTGGTTCAAACTACTCCCCAGAAGAGGCCATGAGAATGCTGCAGTTGGCACTGCTGTGCACCAATCCATCTCCCACTCTTAGGCCACCCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCAATTCAAGCACCAATAATCAAACGCAGTGAAAATGCACAAGATGCAAGATTTAAAGCCTTTGAGATACTATCACAAGACAGCCAAACTCAAGTTTCTTCTACATTCTTACAAGATAGTATAGAGCAAAGCAGGAAATCAATGGATGGGCCTTGGATTGACTCCTCCATATCTCTTCCAAGTAGAGACGATTATTCTTCAACCAATAAACTTATTCGAGGTTCGAATGATGTGTGA 3075 0.4075 MGRRHNKMWFVISSFKRVSVFFYVFLALNCFGEFGSNAQLIPQDEVKLLQTISDKVENLNWKVTERSCSGDNGFGNQDISGDQITRNVTCDCSFNASTICHVKFIVLKGLNISGVMPSEFGNLTQLKILDLTRNYINGSIPKSLGRLSLVTLSLLGNRLSGPIPSEIGDIASLQELNLEDNQLGGPLPPSLGNLRSLLRLLLSANNFTGTIPETLGNLNNLTQFRIDGSSLSGKIPNFIGNWSKLERLDLQGTSLEGPIPPAISSLTNLKELRISDLTGPTMTFPDLKNMKRMQRLELRNCLITGPIPGYIGQMENLKTLDLSSNGLTGPIPDSLEDLDSINFMFLSNNSLNGSIPGWILNNKQNIDLSLNNFTESSASNCQLLDVNLASSYSPSASTSLSCLKKGLPCSGKQQFHSLFINCGGPELESEGNEYEADTNLRGISNFVTSNDGKWAYSSTGVYLGNEKADYVATNVFSLNISGPEYYQTARISPLSLNYYGLCMLKGNYNVKLHFAEIMFSDDKTFSSLGRRIFDVSIQGIKYLKDFNIVKEANGVGKGIIREFNVDVNDSTLEIHLSWAGKGTNAIPVRGVYGPLISAITVTPNFKIPSNGLSAGAIVGIVVGSCVFVILILFVLWKMGFLGGKDPTDKELLDLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGATIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKEEQRLHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSPEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPIIKRSENAQDARFKAFEILSQDSQTQVSSTFLQDSIEQSRKSMDGPWIDSSISLPSRDDYSSTNKLIRGSNDV. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06369 1024 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Seca4g06369 1024 Gene3D Ribonuclease Inhibitor 202 407 IPR032675 -
Seca4g06369 1024 Gene3D Phosphorylase Kinase; domain 1 643 746 - -
Seca4g06369 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 26 974 - -
Seca4g06369 1024 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 222 IPR000225 GO:0005515
Seca4g06369 1024 SUPERFAMILY Protein kinase-like (PK-like) 655 943 IPR011009 -
Seca4g06369 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Seca4g06369 1024 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515
Seca4g06369 1024 Pfam Protein tyrosine and serine/threonine kinase 675 941 IPR001245 GO:0004672|GO:0006468
Seca4g06369 1024 Pfam Malectin domain 418 599 IPR021720 -
Seca4g06369 1024 SMART serkin_6 671 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06369 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 211 278 - -
Seca4g06369 1024 ProSiteProfiles Protein kinase domain profile. 671 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06369 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 954 - -
Seca4g06369 1024 Gene3D - 416 604 - -
Seca4g06369 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 415 604 - -
Seca4g06369 1024 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 279 402 - -
Seca4g06369 1024 Gene3D Transferase(Phosphotransferase) domain 1 747 965 - -
Seca4g06369 1024 CDD STKc_IRAK 677 944 - -
Seca4g06369 1024 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 45 210 - -
Seca4g06369 1024 Gene3D Ribonuclease Inhibitor 48 201 IPR032675 -
Seca4g06369 1024 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 746 - -
Seca4g06369 1024 SUPERFAMILY L domain-like 96 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06369 Seca-Chr4 126297648 126309179 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06369 8 1009 Receptor kinase-like Gene Family AT1G53440 63.905 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06369 PK_Tyr_Ser-Thr 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06369 - - gmx:121173337 1605.11