Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06365 ATGTTTCTAACTAACAACTCTCTGAGTGGACCAATCCCTGGATGGATACTAAATAGCAAACAGAACATTGATTTGTCTTTCAACAATTTTTCAGAGTCTTCTGCATCTAGATGCCAGCGCTTGGATGTGAACTTAGCTGCCAGCCACTCTCCTTTAGCAAACACTTCATTGTCTTGTTTGAAGATGGACCTGCCTTGTTCAGGAAAACCCCAGTATCATTCATTGTTCATAAACTGTGGAGGACCTGCAACAGAGTTTAAGGGCAAAAAATATGAACCCGACACCAGTCTACGTGGCATTTCACACTTTGTTCGTAGTAATGACGGTAGTTGGGCTCATAGCAGCACTGGAGTATATCTAGGAAATGAAAAGGCTGATTATGTAGCAACAAATGAGTTCTCTTTGAATATTAATGGCCCTGAATACTTCCAAACAGCCCGCATGGCCCCTTTGTCTCTTAATTACTTTGGATTTTGTATGTTGAAGGGCAATTATAAAGTGAAGCTTCATTTTGCTGAGATAATGTTTTCTGATGACAAGACATTCAGCAGCCTTGGAAGGCGTATATTTGATGTATCAATTCAAGGTGTTAAATATTTGAAAGATTTTAACATTGTGAAAGAAGCTGGTGGAGTTGGCAAGGGAGTCACTAAGGAGTTTAATGTTGATGTTAATGATAGCACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCACTCCTTTGAGAGGTGTATATGGTCCTCTTATATCTGCTATTACTGTGACCCCAAACTTTAAAGTTCCTTCAAATGGATTGTCTACTGGAGCAATTGTTGGAATTGTGACTGCATCATGTGTACCTGTCATACTGATACTCTTTGCCTTATGGAAGATGGGTTTCCTCAAGGGGAAAGATCCAACAGACAAAGAACTTCTAGATCTGAAAACAGGATATTTTAGTTTGAGACAAATTAAAGCTGCTACTGATAACTTTGACCCAGCAAATAAGATAGGGGAAGGAGGCTTTGGGCCAGTGTACAAGGGTGTATTTCCAGATGGTGCAGCGATTGCCGTTAAGCAACTCTCCTCCAAATCAAAGCAAGGAAACCGTGAATTCGTTACTGAAATAGGAATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAGCTTTATGGTTGTTGCATTGAAGGAAACCAATTGTTACTTATATATGAATACATGGAGAACAATAGTCTTGCTCGAGCACTTTTTGGTAAAGAAGAACAAAGTATGCACTTGGAGTGGCCCACAAGAATGAAGATTTGTGTGGGGATAGCAAAGGGATTGTCTTATCTACATGAAGAATCAAGGTTGAAAATAGTACACAGGGATATTAAGGCAACCAATGTCTTGCTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACTCATATCAGCACACGAATAGCTGGGACAATTGGCTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTTTATCTTCTGGATTGGGCCCACGTTCTCCATGAGCAAGGAAACCTTCTAGAATTGGTTGATCCAAGTCTTGGTTCAAGCTACTGCCCAGAAGAGGCCATGAGAATGCTGCAGGTGGCACTTGTGTGCACCAATCCATCACCCACTCATAGGCTACCCATGTCAACTGTAGTGAGCATGCTTGAAGGAAAAACTCCAATTCAAGCACCAATAGTTAAATGCAGTGATAGTACACAAGATGCAAGATTTAAAGCCTTTGAGATGCTATCACAAGACAGCCAAACTAATGTTTCTTCTACATTCATACAAGATAGTATGGAGCAAAGAAGCAAATCAGTGGATGGGCCATGGGTTGACTCCTCCGTATCTCTTCCAAGTAGAGACGATTAA 2004 0.4097 MFLTNNSLSGPIPGWILNSKQNIDLSFNNFSESSASRCQRLDVNLAASHSPLANTSLSCLKMDLPCSGKPQYHSLFINCGGPATEFKGKKYEPDTSLRGISHFVRSNDGSWAHSSTGVYLGNEKADYVATNEFSLNINGPEYFQTARMAPLSLNYFGFCMLKGNYKVKLHFAEIMFSDDKTFSSLGRRIFDVSIQGVKYLKDFNIVKEAGGVGKGVTKEFNVDVNDSTLEIHLSWAGKGTNATPLRGVYGPLISAITVTPNFKVPSNGLSTGAIVGIVTASCVPVILILFALWKMGFLKGKDPTDKELLDLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVFPDGAAIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKEEQSMHLEWPTRMKICVGIAKGLSYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAHVLHEQGNLLELVDPSLGSSYCPEEAMRMLQVALVCTNPSPTHRLPMSTVVSMLEGKTPIQAPIVKCSDSTQDARFKAFEMLSQDSQTNVSSTFIQDSMEQRSKSVDGPWVDSSVSLPSRDD. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06365 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Seca4g06365 667 Gene3D - 73 261 - -
Seca4g06365 667 SMART serkin_6 328 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06365 667 Pfam Protein tyrosine and serine/threonine kinase 332 543 IPR001245 GO:0004672|GO:0006468
Seca4g06365 667 FunFam Putative LRR receptor-like serine/threonine-protein kinase 404 611 - -
Seca4g06365 667 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 631 - -
Seca4g06365 667 Gene3D Transferase(Phosphotransferase) domain 1 404 630 - -
Seca4g06365 667 SUPERFAMILY Protein kinase-like (PK-like) 312 600 IPR011009 -
Seca4g06365 667 Pfam Malectin domain 75 256 IPR021720 -
Seca4g06365 667 Gene3D Phosphorylase Kinase; domain 1 296 403 - -
Seca4g06365 667 CDD STKc_IRAK 334 601 - -
Seca4g06365 667 ProSiteProfiles Protein kinase domain profile. 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06365 667 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 299 403 - -
Seca4g06365 667 MobiDBLite consensus disorder prediction 641 657 - -
Seca4g06365 667 MobiDBLite consensus disorder prediction 641 667 - -
Seca4g06365 667 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 72 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06365 Seca-Chr4 126220964 126225568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06365 1 666 Receptor kinase-like Gene Family AT1G53440 66.174 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06365 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06365 - - gmx:121173337 1113.21