Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06334 ATGGAGAATCGCCATCCTTCATATGACAGAAAGGCTTTGGAACAAGAGCTAGCCAGAGGACATGACATGGCAAACCAATTACTTGAAGTACTTGTTCATAAATATTCAAATACTCATCATGGAGATGTTGAAGGGTTAATGTTACCGTTTGCCAAAGATCTTGTGCATAAGGTACTAACATCGTTCACAAACACCCTTTTGCTCTTGAACAGCGATAGTGATGATGTCTCCGGTGAGGAAGTTTTGCCTAATTTCTCTTCCTCGGCAAACTTCCCAAAGCCTGAGGATACAGATGAGGCTTGCAAGAGTAGTTTCATGAACGCTAAAAATCGAAGAGGCTGCTACAAAAGAAAATTAAATGCTCTAACTTGGGAGAGGGATAGCTCAACTCTGATTGAAGATGGGTATGCATGGAGAAAGTATGGGCAAAAAAGGATAATGAATACGAAATACCTCAGGTATATATTCTTCAATTTCAAATTATATATCTTCTCTCAAAATTCACTTTCTCTCTAA 516 0.3876 MENRHPSYDRKALEQELARGHDMANQLLEVLVHKYSNTHHGDVEGLMLPFAKDLVHKVLTSFTNTLLLLNSDSDDVSGEEVLPNFSSSANFPKPEDTDEACKSSFMNAKNRRGCYKRKLNALTWERDSSTLIEDGYAWRKYGQKRIMNTKYLRYIFFNFKLYIFSQNSLSL. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06334 171 ProSiteProfiles WRKY domain profile. 127 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06334 171 Pfam WRKY DNA -binding domain 133 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06334 171 Gene3D WRKY domain 121 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g06334 171 SMART WRKY_cls 132 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06334 171 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 154 IPR044810 GO:0003700
Seca4g06334 171 SUPERFAMILY WRKY DNA-binding domain 128 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06334 Seca-Chr4 125388310 125389824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06334 16 156 WRKY Transcription Factor Family AT3G56400 36.301 1.96e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g06334 WRKY 6.5e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06334 - - tpra:123894900 162.54