Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06332 ATGTGTAGGAGCTACTATAAATCCACTCACAAAGATGATCAGAATTGTCCAGCTATCAAACAAGTGCAGAGAATTCATGAGGACCTTCCATTGTACCGGACAACCTATTATGGCCATCACAATTGCAACAGCTCTTTGATAAATGCAGAGGTGATCAAGGAGCTTGATACTTCTTTTGACTCTTCTATATTCCTTAGCTTCAATAACAACCTCCCAAACAAAGAACACGCATTTTCATCATCACTTTTTCCATCCACGAAAAAGGAGCCAATGGAAGTTATTCCCGATTATCATATTGCTCACAACAAACAACACTCAACAAATTGCGCCCTGTTTTGTGACAGTGATGAACTTGATTTCGATTATTTGAAGCATGCTACTATGTTATCATCCACCGAATGTGTTCAATTTGGTAATTTATGGGCATTGTTTGAATTTTGA 441 0.3787 MCRSYYKSTHKDDQNCPAIKQVQRIHEDLPLYRTTYYGHHNCNSSLINAEVIKELDTSFDSSIFLSFNNNLPNKEHAFSSSLFPSTKKEPMEVIPDYHIAHNKQHSTNCALFCDSDELDFDYLKHATMLSSTECVQFGNLWALFEF. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06332 146 ProSiteProfiles WRKY domain profile. 1 45 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06332 146 Gene3D WRKY domain 1 45 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g06332 146 SMART WRKY_cls 3 44 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06332 146 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 73 IPR044810 GO:0003700
Seca4g06332 146 SUPERFAMILY WRKY DNA-binding domain 2 43 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g06332 146 Pfam WRKY DNA -binding domain 3 43 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06332 Seca-Chr4 125374724 125375164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06332 3 63 WRKY Transcription Factor Family AT1G66550 39.344 3.57e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g06332 WRKY 4.3e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06332 - - gmx:102663141 154.451