Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06326 ATGATAGTGGAGAAATGGCTGCCTCCAAATGGCAAAAAGGCATTGGAAGAGGAGCTAATGAGAGGACGTGAAAAGGCAAATCAGTTACTTGAAGTACTTACTGATAAATCGAAGGAAAGGTCAAAATCAGAGGTACCATTTGGTGTTGCTGAACATCTCGTGCGCGAGGTACTGAGATCATTCACGAACACGCTTTTGCTCTTGAGCACCAACGATCAGTACCCCAAAAAGGGCGAACCGCCTATCACTAGAATCAGTAAAAATGGAAGAGGGTCGTCCAGGAGAAAATCAACTGTGCCAACTTGGAAGAAAGACAGCTCATTACTGATTGAAGATGGCCATGCATGGAGAAAGTATGGACAGAAAAAGACAACGAATTCCAAATACCTCAGGAGCTACTATAGGTGCACTCACAAGTATGATCAGGGTTGCCAAGCAATCAAACATGTTCAGAGAATTCAGGATGACCCTCCATTGTACCGGACAAGTTATTATGATCATCACACTTGCAAAAGCTCTTATAATAATTCTGAGATAATTTTGGAACCTGATTCTTCCATATTACTTAACTTCAATAACCACCTTCCAAGCAAAAAAGAAGATCCATCATTTTCATCACCACTTTTCGCATCAACAAAACAGGAGCCTATGGAAGTGATACACAATGACCATATTGCTCTAAACCAATTGTCAGAGAACCTCCTATTATGCGATTATGAAATTTATTCCAATTATTCAAGGCATGCTCATGTCACTATGCTATCGTCGACCGAATATGTTGAATTTGATAATGTGTATGACCGGTTTGGATCTTGA 816 0.4044 MIVEKWLPPNGKKALEEELMRGREKANQLLEVLTDKSKERSKSEVPFGVAEHLVREVLRSFTNTLLLLSTNDQYPKKGEPPITRISKNGRGSSRRKSTVPTWKKDSSLLIEDGHAWRKYGQKKTTNSKYLRSYYRCTHKYDQGCQAIKHVQRIQDDPPLYRTSYYDHHTCKSSYNNSEIILEPDSSILLNFNNHLPSKKEDPSFSSPLFASTKQEPMEVIHNDHIALNQLSENLLLCDYEIYSNYSRHAHVTMLSSTEYVEFDNVYDRFGS. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06326 271 Gene3D WRKY domain 95 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g06326 271 MobiDBLite consensus disorder prediction 77 98 - -
Seca4g06326 271 Pfam WRKY DNA -binding domain 111 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06326 271 SUPERFAMILY WRKY DNA-binding domain 107 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g06326 271 ProSiteProfiles WRKY domain profile. 105 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06326 271 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 199 IPR044810 GO:0003700
Seca4g06326 271 Coils Coil 12 32 - -
Seca4g06326 271 SMART WRKY_cls 110 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06326 Seca-Chr4 125283690 125288830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06326 12 171 WRKY Transcription Factor Family AT5G01900 36.932 1.22e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g06326 WRKY 2.3e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06326 - - gmx:100792193 284.263