Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06322 ATGATAATGAATGCGAAATACCCCAGGAGCTACTACAGATGCACCCACAAATGTGATCAGGGTTGTCCAGCAATCAAAAAAGTGCAGAGAATTCAAGAGGACCCTCCATTGTATCGGACAAGTTATTATGGCCACCACATTTGCAAAACCTCTGTAACTGATCCACAGATAAATTTGGAACCTCCTTCTTCTCCTGCTGGCTCTTCTATATTCCTTAACTTCAATAATAATAACCTCCCAAACAAAGAACAATACCCAGATCATTCATCTACACTTCTTACATCCACAAAACAAGAGCCTATGGAAATTATTCCTGATGATCTTATTGCTCAAAGATCAGATCACCTCTTATGTGACTACAAACTTGATTTCGACTATCAGAAGCATGTTACTATGTTGTCATCTACCGAATCTTTTCAATTTAATAACATTTATGGGTGCGGTTTGGATTTTGATGGCTAG 462 0.3831 MIMNAKYPRSYYRCTHKCDQGCPAIKKVQRIQEDPPLYRTSYYGHHICKTSVTDPQINLEPPSSPAGSSIFLNFNNNNLPNKEQYPDHSSTLLTSTKQEPMEIIPDDLIAQRSDHLLCDYKLDFDYQKHVTMLSSTESFQFNNIYGCGLDFDG. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06322 153 ProSiteProfiles WRKY domain profile. 1 46 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06322 153 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 86 IPR044810 GO:0003700
Seca4g06322 153 Pfam WRKY DNA -binding domain 2 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06322 153 SMART WRKY_cls 1 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g06322 153 Gene3D WRKY domain 1 51 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g06322 153 SUPERFAMILY WRKY DNA-binding domain 2 49 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06322 Seca-Chr4 125202128 125202817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06322 2 56 WRKY Transcription Factor Family AT3G56400 49.091 2.45e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g06322 WRKY 2.5e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06322 - - ccaj:109794623 175.252