Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06320 ATGAAGCATTATGTTTTGTTTCTGTTTTGGAGCAGGATAAAGTGCAGGAGGGATGGGGGAATCCGGTTTACGATTACTGGTTCTGGTATTTTCATTTCGGTGTTGATCAGTAATGTGGCTGGCATCGGGGATATTGTTGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTCCCATGGGTCGGAATTGGGGCCAAAATTGGCATGTAAATGCGTTATTGCAAAATCAGCCTCTTTCATTTGAGGTTACTGGTAGTGATGACAACTTTATGACATTAATTTATATGAGCAAATTAAAGCTATTTTTCAAAGAAAATAGTTGA 324 0.392 MKHYVLFLFWSRIKCRRDGGIRFTITGSGIFISVLISNVAGIGDIVGVKVKGSKTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDDNFMTLIYMSKLKLFFKENS. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06320 107 SUPERFAMILY PHL pollen allergen 17 92 IPR036749 -
Seca4g06320 107 Gene3D - 20 98 IPR036749 -
Seca4g06320 107 PRINTS Expansin signature 19 31 IPR002963 GO:0009664
Seca4g06320 107 PRINTS Expansin signature 31 52 IPR002963 GO:0009664
Seca4g06320 107 PRINTS Expansin signature 66 87 IPR002963 GO:0009664
Seca4g06320 107 PANTHER EXPANSIN-A15 10 92 IPR002963 GO:0009664
Seca4g06320 107 Pfam Expansin C-terminal domain 21 89 IPR007117 -
Seca4g06320 107 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 30 107 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06320 Seca-Chr4 125164999 125165322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06320 10 98 Expansin Gene Family AT3G03220 66.292 2.01e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06320 - - adu:107481013 144.821