Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06289 ATGGAAAAAGAATTTTGGGACTCTAACAACAACAACAACACTCAGGATTACATGAATGGCTTCCCCTGGCCACCAAGATCATATACTTGTAGCTTCTGCAGGAAGGAATTCAAGTCTGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGGGATAGAGCAAGGCTGAGACAGTCATCACCAACTGAAGGTCAAGGTTCTATGCTGAATCTTAACCTTAACCCTAACTGCTTAACCACCTCCTCTTCTTTGTCCTCTTCTTCTGCAATAACTGATCTCAAGCCTGCTGTCACTTGCACATTACCTTTGTTTGTTTCTCCTACATCTTCTGCTTCTGCCTCAGATTCTGAGTTGAAAAGATGGGTTGTTGTGGATGGTATCTTATTGAACCCTTTAAGCACAAAGACCTCAGAGCCCAAAATGTCCAATATTAATGCAGAATCTTTGTCTGGGATTGGAGAACATGAAGATGGGTGTAAGATGATGAAGAAGGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTTATTCTTAG 582 0.4192 MEKEFWDSNNNNNTQDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPTEGQGSMLNLNLNPNCLTTSSSLSSSSAITDLKPAVTCTLPLFVSPTSSASASDSELKRWVVVDGILLNPLSTKTSEPKMSNINAESLSGIGEHEDGCKMMKKGEILRMDLEIGLPRDYDLDLELRLGTYS. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06289 193 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Seca4g06289 193 Pfam C2H2-type zinc finger 28 52 - -
Seca4g06289 193 SMART c2h2final6 28 50 IPR013087 -
Seca4g06289 193 MobiDBLite consensus disorder prediction 53 72 - -
Seca4g06289 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Seca4g06289 193 Gene3D Classic Zinc Finger 24 72 - -
Seca4g06289 193 SUPERFAMILY beta-beta-alpha zinc fingers 25 54 IPR036236 -
Seca4g06289 193 PANTHER OS07G0101800 PROTEIN 6 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06289 Seca-Chr4 124588614 124589216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06289 5 190 C2H2 Transcription Factor Family AT3G23130 38.974 4.63e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g06289 zf-C2H2_6 1.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06289 - - var:108333719 231.491