Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06287 ATGTCGTTGAGGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCCTTCAAGGAAGTCCGGGCCCTTGACACCGCCGACGACGGCGACCGCCTCGATGCCGCCGGCGACGAAGGCAATGCGTGGTCCAACTTGCTACCGGAACTTCTCGGGGAGATTATTCGCCGGGTCGACACCGCCGAGGACCAGTGGCCCCACCGCCAAAACGTCGTCTCTTGCGCCTGCGTTTGCAAGCGATGGAGGGACATGACCCGCGAGATCGTAAGGTCTCCTTCTCACAAGGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGAGCAACCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACATTTTACCTCTATCTTGCCCTTACACCATCAGCATTCACAGACAAAGGGAAGTTTCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCGTATGTTGGAAAGTTGAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGCGGTGCCAAACCATCAAGTGGCAGGGCCAGTCGTCGTTTTGCCAGCAAGCAGATAAGTCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTGAAGTGTCCTGTCTCATCAACGGGTGCAAGTTCAGATAGCATGTCACCAGATGGCCATAAAATGGATGATAAAGAACTTGCTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGATCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCTCCAATTTGGTAAAGTAGCGGATGATACTTTTACCATGGATTATAGGCAACCCTTATCTGCCTTCCAGGCGTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1116 0.4946 MSLRKVFRSRKFSRSFKEVRALDTADDGDRLDAAGDEGNAWSNLLPELLGEIIRRVDTAEDQWPHRQNVVSCACVCKRWRDMTREIVRSPSHKGKITFPSCLKQPGPREQPHQCLIKRNKKTSTFYLYLALTPSAFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVSSTGASSDSMSPDGHKMDDKELAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06287 371 Pfam F-box domain 41 88 IPR001810 GO:0005515
Seca4g06287 371 Gene3D Tubby Protein; Chain A 97 371 IPR025659 -
Seca4g06287 371 PANTHER TUBBY-RELATED 37 369 - -
Seca4g06287 371 ProSitePatterns Tub family signature 1. 299 312 IPR018066 -
Seca4g06287 371 SUPERFAMILY Tubby C-terminal domain-like 90 371 IPR025659 -
Seca4g06287 371 ProSitePatterns Tub family signature 2. 356 371 IPR018066 -
Seca4g06287 371 CDD F-box_AtTLP-like 41 85 - -
Seca4g06287 371 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Seca4g06287 371 PRINTS Tubby superfamily signature 281 298 IPR000007 -
Seca4g06287 371 PRINTS Tubby superfamily signature 349 371 IPR000007 -
Seca4g06287 371 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Seca4g06287 371 PRINTS Tubby superfamily signature 328 347 IPR000007 -
Seca4g06287 371 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Seca4g06287 371 PRINTS Tubby superfamily signature 299 315 IPR000007 -
Seca4g06287 371 Gene3D - 36 91 - -
Seca4g06287 371 SUPERFAMILY F-box domain 39 84 IPR036047 GO:0005515
Seca4g06287 371 Pfam Tub family 102 366 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06287 Seca-Chr4 124497997 124503517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06287 1 371 TUB Transcription Factor Family AT1G53320 72.895 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca4g06287 Tub 4.9e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06287 K19600 - gmx:100808096 644.039